Closed qplantec closed 1 year ago
Thank you so much @qplantec for using the package and for reporting this. 🌈 You're right: the new field lineage
under institutions
caused issues when we try to rbind them. I submitted a fix. Hope to merge soon! 🤞🏽
With this fix, the following call works:
library(openalexR)
works_from_dois <- oa_fetch(
entity = "works",
best_oa_location.source.id = "S111155417",
cited_by_count = ">200",
verbose = TRUE
)
#> Requesting url: https://api.openalex.org/works?filter=best_oa_location.source.id%3AS111155417%2Ccited_by_count%3A%3E200
#> Getting 2 pages of results with a total of 244 records...
works_from_dois
#> # A tibble: 244 × 36
#> id display_name author ab publication_date so so_id
#> <chr> <chr> <list> <chr> <chr> <chr> <chr>
#> 1 https://openalex.org/… Nanostructu… <df> "Nan… 2013-06-13 Jour… http…
#> 2 https://openalex.org/… Tuning the … <df> "We … 2015-08-06 Jour… http…
#> 3 https://openalex.org/… Cobalt–Iron… <df> "Cob… 2015-03-04 Jour… http…
#> 4 https://openalex.org/… Simple Chem… <df> "Lig… 2009-01-21 Jour… http…
#> 5 https://openalex.org/… Efficient V… <df> "Eve… 2015-05-03 Jour… http…
#> 6 https://openalex.org/… Lanthanide … <df> "ADV… 1979-01-01 Jour… http…
#> 7 https://openalex.org/… Transformat… <df> "Hum… 2015-01-27 Jour… http…
#> 8 https://openalex.org/… Contributio… <df> "Mol… 2016-06-21 Jour… http…
#> 9 https://openalex.org/… Origin of t… <df> "The… 2014-03-11 Jour… http…
#> 10 https://openalex.org/… High Electr… <df> "Hyd… 2016-12-06 Jour… http…
#> # ℹ 234 more rows
#> # ℹ 29 more variables: host_organization <chr>, issn_l <chr>, url <chr>,
#> # pdf_url <chr>, license <chr>, version <chr>, first_page <chr>,
#> # last_page <chr>, volume <chr>, issue <chr>, is_oa <lgl>,
#> # is_oa_anywhere <lgl>, oa_status <chr>, oa_url <chr>,
#> # any_repository_has_fulltext <lgl>, language <chr>, grants <list>,
#> # cited_by_count <int>, counts_by_year <list>, publication_year <int>, …
Created on 2023-08-28 with reprex v2.0.2
Thank you so much for your quick answer and for quickly fixing the issue :)! Do you know when I will be able to load the package again on R to have the version with the bug fixed? Many thanks again for your work on this! Best
@qplantec Pending my collaborator's approval, but for now could you try
remotes::install_github("ropensci/openalexR@institution-lineage")
It works perfectly, thank you so much :)
Thank you, I was also having this issue and installing your bug fix from Github fixed it!
Dear OpenAlexR team,
I am facing an issue when extracting OpenAlex data with the oa_fetch function. When querying the database, the "download" process seems to work well. However, the "converting" process no longer works well, and I received an error message.
It works correctly when using output = "list". However, it fails when using "tibble" or "dataframe" as output. I guess it might be due to an update of the data format (or an issue with the dependencies).
For example, if I am doing a query like this one:
I get the following response: