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ropensci / phylotaR

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
https://docs.ropensci.org/phylotaR
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Decide on what the package output should be #2

Closed hettling closed 6 years ago

hettling commented 7 years ago

At the moment, the code produces tables as in the phylota database, so the output can be read into supersmart.

We should carefully think of what a possible user might want from this package; I suppose some tsv files that can be read into sqlite is not so attractive.

Maybe it should produce a fasta file per cluster?