I have been facing problems to diagnosis the gene/marker that my clusters represent because the description and feature variables do not bring as much information. We know that Genbank is a mess and, unfortunately, people give a lot of information in the description and the 2 most common words in my phylotaR description are usually not the information that I need.
Here follows an example:
The description just brings gene(0.1), mitochondrial (0.1), which doesn't bring the information that I need. I got one of the "seed" and look for it on Genbank to see the gene that cluster refers to and I realized that it refers to NADH gene, but without looking for it, I would not able to recognize it "Acipenser persicus persicus isolate AP1 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial gene for mitochondrial product".
So I would like to know whether is possible to bring more words in this "Description" variable.
Hi,
I have been facing problems to diagnosis the gene/marker that my clusters represent because the description and feature variables do not bring as much information. We know that Genbank is a mess and, unfortunately, people give a lot of information in the description and the 2 most common words in my phylotaR description are usually not the information that I need.
Here follows an example:
The description just brings gene(0.1), mitochondrial (0.1), which doesn't bring the information that I need. I got one of the "seed" and look for it on Genbank to see the gene that cluster refers to and I realized that it refers to NADH gene, but without looking for it, I would not able to recognize it "Acipenser persicus persicus isolate AP1 NADH dehydrogenase subunit 5 gene, partial cds; mitochondrial gene for mitochondrial product".
So I would like to know whether is possible to bring more words in this "Description" variable.
Thank you,
Ingrid Bunholi