ropensci / phylotaR

An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
https://docs.ropensci.org/phylotaR
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Fix pkgdown configuration for reference #61

Closed maelle closed 2 years ago

maelle commented 2 years ago

Some topics are missing from the configuration file.

 Error in check_missing_topics(rows, pkg) : 
  All topics must be included in reference index
• Missing topics: outfmt_get

Note that for topics you do not want to include in the index you can create an "internal" section https://pkgdown.r-lib.org/reference/build_reference.html?q=internal#missing-topics

To check all topics are listed, after editing the configuration file you can run pkgdown::check_pkgdown().

maelle commented 2 years ago

@ShixiangWang Friendly reminder :smile_cat:

ShixiangWang commented 2 years ago

@maelle Thanks for your notion. Sorry for the delay as I did not get the message before you at me. I will take a look and fix it in the two days :).

maelle commented 2 years ago

no problem, thank you!