Closed towitter closed 2 years ago
Hi @towitter
Can you provide me with your session info, especially which rcrossref version you are using. Here's my reprex
library(rcrossref)
library(sessioninfo)
cr_cn("10.1126/science.169.3946.635")
#> [1] "@article{Frank_1970,\n\tdoi = {10.1126/science.169.3946.635},\n\turl = {https://doi.org/10.1126%2Fscience.169.3946.635},\n\tyear = 1970,\n\tmonth = {aug},\n\tpublisher = {American Association for the Advancement of Science ({AAAS})},\n\tvolume = {169},\n\tnumber = {3946},\n\tpages = {635--641},\n\tauthor = {Henry S. Frank},\n\ttitle = {The Structure of Ordinary Water},\n\tjournal = {Science}\n}"
sessioninfo::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.1.2 (2021-11-01)
#> os macOS Big Sur 11.4
#> system aarch64, darwin20
#> ui X11
#> language en
#> collate de_DE.UTF-8
#> ctype de_DE.UTF-8
#> tz Europe/Copenhagen
#> date 2022-01-26
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date lib source
#> assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.1.0)
#> backports 1.2.1 2020-12-09 [1] CRAN (R 4.1.0)
#> cli 3.1.0 2021-10-27 [1] CRAN (R 4.1.1)
#> crayon 1.4.2 2021-10-29 [1] CRAN (R 4.1.1)
#> crul 1.1.0 2021-02-15 [1] CRAN (R 4.1.0)
#> curl 4.3.2 2021-06-23 [1] CRAN (R 4.1.0)
#> DBI 1.1.1 2021-01-15 [1] CRAN (R 4.1.0)
#> digest 0.6.28 2021-09-23 [1] CRAN (R 4.1.1)
#> dplyr 1.0.7 2021-06-18 [1] CRAN (R 4.1.0)
#> DT 0.19 2021-09-02 [1] CRAN (R 4.1.1)
#> ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.1.0)
#> evaluate 0.14 2019-05-28 [1] CRAN (R 4.1.0)
#> fansi 0.5.0 2021-05-25 [1] CRAN (R 4.1.0)
#> fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.0)
#> fs 1.5.0 2020-07-31 [1] CRAN (R 4.1.0)
#> generics 0.1.1 2021-10-25 [1] CRAN (R 4.1.1)
#> glue 1.4.2 2020-08-27 [1] CRAN (R 4.1.0)
#> highr 0.9 2021-04-16 [1] CRAN (R 4.1.0)
#> htmltools 0.5.2 2021-08-25 [1] CRAN (R 4.1.1)
#> htmlwidgets 1.5.4 2021-09-08 [1] CRAN (R 4.1.1)
#> httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.1.0)
#> httpuv 1.6.3 2021-09-09 [1] CRAN (R 4.1.1)
#> jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.1.0)
#> knitr 1.37 2021-12-16 [1] CRAN (R 4.1.1)
#> later 1.3.0 2021-08-18 [1] CRAN (R 4.1.1)
#> lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.1.1)
#> magrittr 2.0.1 2020-11-17 [1] CRAN (R 4.1.0)
#> mime 0.12 2021-09-28 [1] CRAN (R 4.1.1)
#> miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.1.0)
#> pillar 1.6.4 2021-10-18 [1] CRAN (R 4.1.0)
#> pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.0)
#> plyr 1.8.6 2020-03-03 [1] CRAN (R 4.1.0)
#> promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.1.0)
#> purrr 0.3.4 2020-04-17 [1] CRAN (R 4.1.0)
#> R6 2.5.1 2021-08-19 [1] CRAN (R 4.1.1)
#> Rcpp 1.0.7 2021-07-07 [1] CRAN (R 4.1.0)
#> rcrossref * 1.1.0.99 2021-10-16 [1] Github (ropensci/rcrossref@319f34c)
#> reprex 2.0.0 2021-04-02 [1] CRAN (R 4.1.0)
#> rlang 0.4.12 2021-10-18 [1] CRAN (R 4.1.0)
#> rmarkdown 2.11 2021-09-14 [1] CRAN (R 4.1.1)
#> sessioninfo * 1.1.1 2018-11-05 [1] CRAN (R 4.1.0)
#> shiny 1.7.1 2021-10-02 [1] CRAN (R 4.1.1)
#> stringi 1.7.5 2021-10-04 [1] CRAN (R 4.1.1)
#> stringr 1.4.0 2019-02-10 [1] CRAN (R 4.1.0)
#> styler 1.5.1 2021-07-13 [1] CRAN (R 4.1.0)
#> tibble 3.1.5 2021-09-30 [1] CRAN (R 4.1.1)
#> tidyselect 1.1.1 2021-04-30 [1] CRAN (R 4.1.0)
#> triebeard 0.3.0 2016-08-04 [1] CRAN (R 4.1.0)
#> urltools 1.7.3 2019-04-14 [1] CRAN (R 4.1.0)
#> utf8 1.2.2 2021-07-24 [1] CRAN (R 4.1.0)
#> vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.1.0)
#> withr 2.4.2 2021-04-18 [1] CRAN (R 4.1.0)
#> xfun 0.29 2021-12-14 [1] CRAN (R 4.1.1)
#> xml2 1.3.2 2020-04-23 [1] CRAN (R 4.1.0)
#> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.1.0)
#> yaml 2.2.1 2020-02-01 [1] CRAN (R 4.1.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library
Created on 2022-01-26 by the reprex package (v2.0.0)
Here you go @njahn82
> library(rcrossref)
> library(sessioninfo)
>
> cr_cn("10.1126/science.169.3946.635")
Error in cr_GET(endpoint = sprintf("works/%s/agency", x), args = list(), :
res$response_headers$`content-type` == "application/json;charset=UTF-8" ist nicht TRUE
> session_info()
- Session info ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
setting value
version R version 4.1.0 (2021-05-18)
os Windows 10 x64
system x86_64, mingw32
ui RStudio
language (EN)
collate German_Germany.1252
ctype German_Germany.1252
tz Europe/Berlin
date 2022-01-26
- Packages --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
package * version date lib source
assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.1.0)
backports 1.2.1 2020-12-09 [1] CRAN (R 4.1.0)
bit 4.0.4 2020-08-04 [1] CRAN (R 4.1.0)
bit64 4.0.5 2020-08-30 [1] CRAN (R 4.1.0)
blob 1.2.1 2020-01-20 [1] CRAN (R 4.1.0)
broom 0.7.9 2021-07-27 [1] CRAN (R 4.1.1)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.1.0)
cli 3.0.0 2021-06-30 [1] CRAN (R 4.1.0)
colorspace 2.0-2 2021-06-24 [1] CRAN (R 4.1.0)
crayon 1.4.1 2021-02-08 [1] CRAN (R 4.1.0)
crul 1.1.0 2021-02-15 [1] CRAN (R 4.1.0)
curl 4.3.2 2021-06-23 [1] CRAN (R 4.1.0)
data.table * 1.14.0 2021-02-21 [1] CRAN (R 4.1.0)
DBI 1.1.1 2021-01-15 [1] CRAN (R 4.1.0)
dbplyr 2.1.1 2021-04-06 [1] CRAN (R 4.1.0)
digest 0.6.28 2021-09-23 [1] CRAN (R 4.1.1)
dplyr * 1.0.7 2021-06-18 [1] CRAN (R 4.1.0)
DT 0.18 2021-04-14 [1] CRAN (R 4.1.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.1.0)
fansi 0.5.0 2021-05-25 [1] CRAN (R 4.1.0)
fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.1.0)
forcats * 0.5.1 2021-01-27 [1] CRAN (R 4.1.0)
fs 1.5.0 2020-07-31 [1] CRAN (R 4.1.0)
generics 0.1.0 2020-10-31 [1] CRAN (R 4.1.0)
ggplot2 * 3.3.5 2021-06-25 [1] CRAN (R 4.1.0)
glue 1.4.2 2020-08-27 [1] CRAN (R 4.1.0)
gtable 0.3.0 2019-03-25 [1] CRAN (R 4.1.0)
haven 2.4.1 2021-04-23 [1] CRAN (R 4.1.0)
hms 1.1.1 2021-09-26 [1] CRAN (R 4.1.1)
htmltools 0.5.2 2021-08-25 [1] CRAN (R 4.1.1)
htmlwidgets 1.5.4 2021-09-08 [1] CRAN (R 4.1.1)
httpcode 0.3.0 2020-04-10 [1] CRAN (R 4.1.0)
httpuv 1.6.3 2021-09-09 [1] CRAN (R 4.1.1)
httr 1.4.2 2020-07-20 [1] CRAN (R 4.1.0)
jsonlite 1.7.2 2020-12-09 [1] CRAN (R 4.1.0)
later 1.3.0 2021-08-18 [1] CRAN (R 4.1.1)
lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.1.1)
lubridate 1.7.10 2021-02-26 [1] CRAN (R 4.1.0)
magrittr * 2.0.1 2020-11-17 [1] CRAN (R 4.1.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.1.1)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.1.0)
modelr 0.1.8 2020-05-19 [1] CRAN (R 4.1.0)
munsell 0.5.0 2018-06-12 [1] CRAN (R 4.1.0)
pillar 1.6.3 2021-09-26 [1] CRAN (R 4.1.1)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.1.0)
plyr 1.8.6 2020-03-03 [1] CRAN (R 4.1.0)
promises 1.2.0.1 2021-02-11 [1] CRAN (R 4.1.0)
purrr * 0.3.4 2020-04-17 [1] CRAN (R 4.1.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.1.1)
Rcpp 1.0.7 2021-07-07 [1] CRAN (R 4.1.0)
rcrossref * 1.1.0 2020-10-02 [1] CRAN (R 4.1.2)
readr * 2.0.2 2021-09-27 [1] CRAN (R 4.1.1)
readxl 1.3.1 2019-03-13 [1] CRAN (R 4.1.0)
reprex 2.0.0 2021-04-02 [1] CRAN (R 4.1.0)
rjson 0.2.21 2022-01-09 [1] CRAN (R 4.1.2)
rlang 0.4.11 2021-04-30 [1] CRAN (R 4.1.0)
RPostgres * 1.3.3 2021-07-05 [1] CRAN (R 4.1.0)
rscopus * 0.6.6 2019-09-17 [1] CRAN (R 4.1.0)
rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.1.0)
rvest 1.0.1 2021-07-26 [1] CRAN (R 4.1.1)
scales 1.1.1 2020-05-11 [1] CRAN (R 4.1.0)
sessioninfo * 1.1.1 2018-11-05 [1] CRAN (R 4.1.0)
shiny 1.7.1 2021-10-02 [1] CRAN (R 4.1.1)
stringi 1.7.5 2021-10-04 [1] CRAN (R 4.1.1)
stringr * 1.4.0 2019-02-10 [1] CRAN (R 4.1.0)
tibble * 3.1.5 2021-09-30 [1] CRAN (R 4.1.1)
tidyr * 1.1.4 2021-09-27 [1] CRAN (R 4.1.1)
tidyselect 1.1.1 2021-04-30 [1] CRAN (R 4.1.0)
tidyverse * 1.3.1 2021-04-15 [1] CRAN (R 4.1.0)
triebeard 0.3.0 2016-08-04 [1] CRAN (R 4.1.0)
tzdb 0.1.2 2021-07-20 [1] CRAN (R 4.1.1)
urltools 1.7.3 2019-04-14 [1] CRAN (R 4.1.0)
utf8 1.2.2 2021-07-24 [1] CRAN (R 4.1.1)
vctrs 0.3.8 2021-04-29 [1] CRAN (R 4.1.0)
withr 2.4.2 2021-04-18 [1] CRAN (R 4.1.0)
xml2 1.3.2 2020-04-23 [1] CRAN (R 4.1.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.1.0)
[1] /R/win-library/4.1
[2] /R-4.1.0/library
Please re-install rcrossref using the dev version.
remotes::install_github("ropensci/rcrossref")
CRAN version has not been updated yet.
Ok, I did. Unfortunately, the warning still return, even with rcrossref * 1.1.0.99 2021-10-16 [1] Github (ropensci/rcrossref@319f34c).
rcrossref::cr_cn("https://doi.org/10.1073/pnas.1915841117", 'text') [1] "Agrawal, M., Peterson, J. C., & Griffiths, T. L. (2020). Scaling up psychology via Scientific Regret Minimization. Proceedings of the National Academy of Sciences, 117(16), 8825–8835. doi:10.1073/pnas.1915841117" Warning message: https://doi.org/10.1073/pnas.1915841117 agency not found - proceeding with 'crossref' ...
I think the issue is that the API does not support DOI links, but just DOIs. Please call cr_cn
using DOIs only to avoid the warning.
# DOI link
rcrossref::cr_cn('https://doi.org/10.1073/pnas.1915841117', 'text')
#> Warning: https://doi.org/10.1073/pnas.1915841117 agency not found - proceeding
#> with 'crossref' ...
#> [1] "Agrawal, M., Peterson, J. C., & Griffiths, T. L. (2020). Scaling up psychology via Scientific Regret Minimization. Proceedings of the National Academy of Sciences, 117(16), 8825–8835. doi:10.1073/pnas.1915841117"
# DOI
rcrossref::cr_cn('10.1073/pnas.1915841117', 'text')
#> [1] "Agrawal, M., Peterson, J. C., & Griffiths, T. L. (2020). Scaling up psychology via Scientific Regret Minimization. Proceedings of the National Academy of Sciences, 117(16), 8825–8835. doi:10.1073/pnas.1915841117"
Created on 2022-01-27 by the reprex package (v2.0.0)
That solved the issue - thank you so much!
Hi there, I am repeatedly getting the warning 'agency not found' (see referenced issue that was closed before). I am posting below my output from the command @sckott suggested back then. Maybe it helps to clarify why that warning appears? Thanks in advance!
So, I followed that advice and this is what R returns: