ropensci / rentrez

talk with NCBI entrez using R
https://docs.ropensci.org/rentrez
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How to specify genome assembly #171

Open NavXav opened 3 years ago

NavXav commented 3 years ago

I have been trying to extract the SNPs associated with a list of genes and I would like to use GRCh37 as my genome assembly. Is there a parameter that can be added to the following code line to specify what build to use to retrieve the SNPs?

snp_links_all <- entrez_link(dbfrom='gene', id=genes_ID, db='snp', by_id=F)