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ropensci / rentrez

talk with NCBI entrez using R
https://docs.ropensci.org/rentrez
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elink usage example:entrezID->transcript sequence #47

Closed htc502 closed 9 years ago

htc502 commented 9 years ago

Hi, I have add some content into the vignette for elink usage, don' know if it is useful, but it may serve as an example. Appologize for changing unrelated lines in the file, my emacs behaves strangely recently, can not figure out why... find that travis CI test failed... but I can't see the details.

dwinter commented 9 years ago

Thanks @htc502 , this looks good to me :+1:

I don't have much time to work on rentrez this week, but I'll be sure to take a close look at this over the weekend and merge it in.

(the travis error is strange -- says that it can't find one of the rentrez functions which should be exported. Will look inot that too)

dwinter commented 9 years ago

hi @htc502 merged in thank you very much.

As you'll see, I'm showing my megalomania a little here and changing what you wrote a little.

That's mainly because (a) I want the vignette to be as gentle an intro as possible, so to really break down the steps of getting objects and checking them out and (b) I want to present searching/linking for IDs before I get to fetching the records.

I'll be sure to use the code in your example in the fetch examples, and possible the whole thing as a wiki/cookbook example

Thanks again!

htc502 commented 9 years ago

Glad to hear that, you r welcome. @dwinter