ropensci / rentrez

talk with NCBI entrez using R
https://docs.ropensci.org/rentrez
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Document XML dumps in summary records #83

Closed dwinter closed 7 years ago

dwinter commented 8 years ago

As per #82, some databases return summary records that contain (escaped) XML for some elements.

There is no indication as to which databases will produce these records (it seems to be mostly those associated with SRA), and I don't want to have rentrez guess this kind of thing (it would be better to have another pacakge deal specifically with certain data types). So, we should document the fact these elements contain the XML file returned by entrez_fetch and show how to extract that information in the vignette or wiki.

dwinter commented 7 years ago

On the wiki https://github.com/ropensci/rentrez/wiki/Parse-html--information-within-esummary-records