angle-zhang
commented
2 years ago Having the same problem as well!
Open biomendi opened 2 years ago
angle-zhang
commented
2 years ago Having the same problem as well!
cboettig
commented
2 years ago sorry of the slow reply, having trouble reproducing this. Please ensure your system is up to date, in particular, your authority certificates? (On linux systems this is usually something like apt-get install ca-certificates, but not sure on the Mac, probably part of the standard OS update though...)
Lithobius
commented
1 year ago Hi. I used rfishbase a few months ago with no issues. However, I am now trying to use it again and somehow the package is not working on my system. The below error shows up when trying to run any command. Any idea on how to solve it? Thanks.
validate_names("Abramites ternetzi") Error in rbind(deparse.level, ...) : numbers of columns of arguments do not match In addition: Warning messages: 1: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired 2: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired 3: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired 4: Error in curl::curl_fetch_memory(file, handle): SSL certificate problem: certificate has expired 5: In curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired 6: In curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired
Session Info
I also had this problem, and I used this solution in terminal: https://github.com/ropensci/rbhl/issues/28#issuecomment-638398244
Some months ago I had the same issue with taxize, then today I had the same problem with rfishbase after updating R. I've used this solution on 3 different computers each using a different OSX version.
It is a hard to replicate problem, has more to do with stuff in terminal than any given R package.
cboettig
commented
1 year ago Thanks @Lithobius for linking that solution for Mac!
Hi. I used rfishbase a few months ago with no issues. However, I am now trying to use it again and somehow the package is not working on my system. The below error shows up when trying to run any command. Any idea on how to solve it? Thanks.
Session Info
```r R version 4.2.0 (2022-04-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Mojave 10.14.6 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] dplyr_1.0.9 rfishbase_4.0.0 loaded via a namespace (and not attached): [1] pillar_1.7.0 compiler_4.2.0 dbplyr_2.1.1 remotes_2.4.2 prettyunits_1.1.1 tools_4.2.0 progress_1.2.2 [8] pkgbuild_1.3.1 bit_4.0.4 contentid_0.0.15 jsonlite_1.8.0 memoise_2.0.1 lifecycle_1.0.1 tibble_3.1.7 [15] pkgconfig_2.0.3 rlang_1.0.2 rstudioapi_0.13 DBI_1.1.2 cli_3.3.0 parallel_4.2.0 curl_4.3.2 [22] fastmap_1.1.0 withr_2.5.0 duckdb_0.3.2-2 httr_1.4.3 stringr_1.4.0 generics_0.1.2 fs_1.5.2 [29] vctrs_0.4.1 askpass_1.1 hms_1.1.1 rprojroot_2.0.3 bit64_4.0.5 tidyselect_1.1.2 glue_1.6.2 [36] R6_2.5.1 processx_3.5.3 fansi_1.0.3 vroom_1.5.7 callr_3.7.0 purrr_0.3.4 readr_2.1.2 [43] tzdb_0.3.0 magrittr_2.0.3 ps_1.7.0 ellipsis_0.3.2 assertthat_0.2.1 utf8_1.2.2 stringi_1.7.6 [50] openssl_2.0.0 cachem_1.0.6 crayon_1.5.1 ```