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ropensci / rfishbase

R interface to the fishbase.org database
https://docs.ropensci.org/rfishbase
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Error in rbind(deparse.level, ...) : 变量的列数不对 In addition: Warning message: In curl::curl_fetch_memory(url, handle = handle) : Timeout was reached: [cn.dataone.org] SSL/TLS connection timeout #258

Closed ZhisenLuo closed 1 year ago

ZhisenLuo commented 1 year ago

library(rfishbase) species_name = species_list(Family = "Mullidae")

Just test two lines of code, but there is an error:

Error in rbind(deparse.level, ...) : 变量的列数不对
In addition: Warning message: In curl::curl_fetch_memory(url, handle = handle) : Timeout was reached: [cn.dataone.org] SSL/TLS connection timeout

1672931168377

cboettig commented 1 year ago

thanks for the report! Can you try again now? (looks like this was just a temporary internet outage)

can you provide the output of:

library(rfishbase)
devtools::session_info()

Can you also confirm that you can reach the server mentioned:

httr::HEAD("https://cn.dataone.org")

should show Status: 200

ZhisenLuo commented 1 year ago

thanks for the report! Can you try again now? (looks like this was just a temporary internet outage)

can you provide the output of:

library(rfishbase)
devtools::session_info()

Can you also confirm that you can reach the server mentioned:

httr::HEAD("https://cn.dataone.org")

should show Status: 200

Thank you very much. Adding code "devtools::session_info()", it can work! Amazing! And I wanna ask another question. How could I get the information of IUCN in fishbase using R?

Simonestevo commented 1 year ago

Hi there, I think I am having the same issue as the previous user (although it seems like theirs resolved itself). I've tried to use previously working fishbase code on two different machines and receive these errors:

image

Outputs from session info and server:

devtools::session_info() ─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── setting value version R version 4.2.2 (2022-10-31 ucrt) os Windows 10 x64 (build 19044) system x86_64, mingw32 ui RStudio language (EN) collate English_Australia.utf8 ctype English_Australia.utf8 tz Australia/Sydney date 2023-01-16 rstudio 2022.07.2+576 Spotted Wakerobin (desktop) pandoc 2.19.2 @ C:/Program Files/RStudio/bin/quarto/bin/tools/ (via rmarkdown)

httr::HEAD("https://cn.dataone.org") Response [https://search.dataone.org/] Date: 2023-01-15 22:52 Status: 200 Content-Type: text/html

I'd be grateful if you could advise! Thanks in advance.
cboettig commented 1 year ago

this should be avoided in the current github release (4.1.0), cran release to follow. please re-open if issue persists