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ropensci / rfishbase

R interface to the fishbase.org database
https://docs.ropensci.org/rfishbase
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error due to R update #264

Open marinebnt opened 1 year ago

marinebnt commented 1 year ago

Hi,

The following error : Error in validate_key(key) : could not find function "validate_key" appears when I try to use the functions species() or _specieslist() with the latest R version (4.2.2). I have tried to run the same code with the former R version (4.2.1) and it runs correctly. I am using the version 4.1.1 of rfishbase.

Many thanks

cboettig commented 1 year ago

@marinebnt thanks for the report and apologies for the trouble.

Can you provide the output of running sessionInfo() in R after you see this error? It might be worth checking that all package dependencies are also up-to-date, e.g. remotes::install_github("ropensci/rfishbase"), and select update all package dependencies at the prompt.

Also, just a note that currently, the latest version of R is actually 4.3.0.

marinebnt commented 1 year ago

Good news, the error disappears with the R version 4.3.0, sorry for the bother. With R version 4.2.2 : Even after doing remotes::install_github("ropensci/rfishbase") the error remains. Here are my session info :

R version 4.2.2 (2022-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19045) Matrix products: default locale: [1] LC_COLLATE=French_France.utf8 LC_CTYPE=French_France.utf8 [3] LC_MONETARY=French_France.utf8 LC_NUMERIC=C [5] LC_TIME=French_France.utf8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] rfishbase_4.1.1 loaded via a namespace (and not attached): [1] progress_1.2.2 gtools_3.9.4 spam_2.9-1 tidyselect_1.2.0 [5] remotes_2.4.2 purrr_1.0.1 colorspace_2.0-3 vctrs_0.6.2 [9] generics_0.1.3 viridisLite_0.4.2 pkgbuild_1.4.0 utf8_1.2.2 [13] rlang_1.1.0 R.oo_1.25.0 pillar_1.9.0 withr_2.5.0 [17] glue_1.6.2 DBI_1.1.3 R.utils_2.12.2 dbplyr_2.3.2 [21] foreach_1.5.2 lifecycle_1.0.3 stringr_1.5.0 fields_14.1 [25] dotCall64_1.0-2 munsell_0.5.0 gtable_0.3.3 calibrar_0.2.0 [29] R.methodsS3_1.8.2 codetools_0.2-19 callr_3.7.3 tzdb_0.3.0 [33] fastmap_1.1.0 ps_1.7.5 curl_5.0.0 fansi_1.0.3 [37] readr_2.1.3 scales_1.2.1 desc_1.4.2 fs_1.6.2 [41] gridExtra_2.3 ggplot2_3.4.2 hms_1.1.3 stringi_1.7.8 [45] processx_3.8.1 dplyr_1.1.2 ncdf4_1.19 grid_4.2.2 [49] rprojroot_2.0.3 here_1.0.1 cli_3.4.1 tools_4.2.2 [53] magrittr_2.0.3 maps_3.4.1 tibble_3.2.1 crayon_1.5.2 [57] pkgconfig_2.0.3 prettyunits_1.1.1 rstudioapi_0.14 iterators_1.0.14 [61] viridis_0.6.3 R6_2.5.1 compiler_4.2.2

Thank you !