Closed sckott closed 9 years ago
You can get geospatial issues field by specifying fields=all
, e.g., getting a single occurrence /occurrence/{key}
occ_get(key=766766824, return='data', fields = "all")
name key datasetKey publishingOrgKey publishingCountry protocol
1 Corvus monedula 766766824 38b4c89f-584c-41bb-bd8f-cd1def33e92f b8323864-602a-4a7d-9127-bb903054e97d SE DWC_ARCHIVE
lastCrawled lastParsed extensions basisOfRecord taxonKey kingdomKey phylumKey classKey orderKey familyKey
1 2014-08-22T17:46:58.881+0000 2014-05-29T16:25:37.014+0000 none HUMAN_OBSERVATION 2482473 1 44 212 729 5235
genusKey speciesKey scientificName kingdom phylum order family genus species genericName specificEpithet
1 2482468 2482473 Corvus monedula Linnaeus, 1758 Animalia Chordata Passeriformes Corvidae Corvus Corvus monedula Corvus monedula
taxonRank decimalLongitude decimalLatitude coordinateAccuracy elevation elevationAccuracy depth depthAccuracy stateProvince year month day
1 SPECIES 17.9054 59.4568 1 -1 0 1 0 Stockholms 2013 1 2
eventDate issues modified lastInterpreted identifiers
1 2013-01-01T23:00:00.000+0000 GEODETIC_DATUM_ASSUMED_WGS84,DEPTH_UNLIKELY 2013-07-05T00:01:12.000+0000 2014-06-05T14:22:20.153+0000 none
facts relations geodeticDatum class countryCode country gbifID institutionCode county catalogNumber locality
1 none none WGS84 Aves SE Sweden 766766824 ArtDatabanken Uppland Bird.27600324 Matningen N Ravalen
identifier collectionCode identifiedBy
1 urn:lsid:artportalen.se:Sighting:Bird.27600324 Artport Göran Frisk, Kristina Frisk
and geospatial issues using the search occurrence endpoint /occurrence/search
gg <- occ_search(taxonKey=3119195, limit=2, fields = "all")
gg$data$issues
[1] "COORDINATE_ROUNDED,GEODETIC_DATUM_ASSUMED_WGS84"
[2] "COORDINATE_ROUNDED,GEODETIC_DATUM_ASSUMED_WGS84,COUNTRY_DERIVED_FROM_COORDINATES"
Issues aren't given back by default. Do you think they should? I decided to give back just a minimal set of fields, but perhaps I should give back more fields or all of them by default?
I'll add issues
field to the default output - thinking that may need to create abbreviations for each issue class since they are so long
this is done now
from @timrobertson100