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ropensci / rotl

Interface to Open Tree of Life API
https://docs.ropensci.org/rotl
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Error in rncl(file = file, ...) #114

Closed TarekHattab closed 6 years ago

TarekHattab commented 6 years ago

Hi,

I tried to apply the function « tol_induced_subtree » as shown in the "README.md" example.

apes <- c("Pongo", "Pan", "Gorilla", "Hoolock", "Homo") (resolved_names <- tnrs_match_names(apes)) tr <- tol_induced_subtree(ott_ids=ott_id(resolved_names))

I got the following message

Error in rncl(file = file, ...) : Expecting a tree description, but found "{" instead

I get the same message on Linux and Windows OS. I have used this function several times before the update of the package without any problem. Do you have an idea about this bug?

fmichonneau commented 6 years ago

Thanks for bringing this up to our attention.

It seems to come from changes to the OpenTree of Life API. I reported this https://github.com/OpenTreeOfLife/feedback/issues/421

fmichonneau commented 6 years ago

The OpenTreeofLife fixed things upstream, and it seems to be working now. Please re-open if it's not the case.