Closed jaynal83 closed 9 years ago
@jaynal83 thanks for this!
I wonder if things have changed, as I think all files used to require skipping 15 lines. Anyway, we'll get it fixed
Thanks for your quick response. I am currently using readLines() to read the file as plain text and then search for # character and then skip automatically, later on converting it to data frame. This is working fine so far.
Here is the code snipped I am using:
y<-readLines("https://opensnp.org/data/1996.23andme.1182",n=-1) y<-y[-which(substr(y,1,1)=="#")] user1996 <- ldply(strsplit(y,"\t"))
Thanks for sharing your code
I updated fetch_genotypes()
to be more general, reading the file whether or not there are comment lines at the top. Reinstall devtools::install_github("ropensci/rsnps")
and try again, let me know if it works for you.
Thanks for quick update. Yes, it is working.
Good.
I was trying to download genotype data from opensnp using fetch_genotypes function. But when I looked at internal code, it skips 15 line by default. Actually there are some files where there is not skips at all. For example: https://opensnp.org/data/6.23andme.5
Thanks