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ropensci / rusda

Interface to USDA Databases
https://docs.ropensci.org/rusda
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Docs seem slightly out of date #10

Open serbinsh opened 3 years ago

serbinsh commented 3 years ago

Looking at exported functions here: https://github.com/ropensci/rusda/blob/master/NAMESPACE

and the docs, for say the function "synonyms_smml" still references "synonyms_usda". 


Examples
## Not run: 
x <- "Solanum tuberosum"
synonyms_usda(x, spec_type = "plant", process = TRUE, clean = TRUE)
x <- c("Phytophthora infestans", "Polyporus badius")
synonyms_usda(x, spec_type = "fungus", process = TRUE, clean = TRUE)

## End(Not run)

But that doesnt seem to be a function any longer?

R version 4.0.2 (2020-06-22)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Mojave 10.14.6

Matrix products: default
BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rusda_1.0.8

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5         lattice_0.20-41    ape_5.4-1          zoo_1.8-8          prettyunits_1.1.1  ps_1.4.0           assertthat_0.2.1   rprojroot_1.3-2   
 [9] digest_0.6.27      foreach_1.5.1      mime_0.9           R6_2.5.0           plyr_1.8.6         backports_1.2.0    httr_1.4.2         pillar_1.4.6      
[17] spectrolab_0.0.10  rlang_0.4.8        uuid_0.1-4         curl_4.3           data.table_1.13.2  rstudioapi_0.11    taxize_0.9.99      callr_3.5.1       
[25] mathjaxr_1.0-1     desc_1.2.0         devtools_2.3.2     shinyjs_2.0.0      stringr_1.4.0      RCurl_1.98-1.2     shiny_1.5.0        compiler_4.0.2    
[33] httpuv_1.5.4       pkgconfig_2.0.3    pkgbuild_1.1.0     conditionz_0.1.0   htmltools_0.5.0    tidyselect_1.1.0   tibble_3.0.4       httpcode_0.3.0    
[41] codetools_0.2-16   XML_3.99-0.5       reshape_0.8.8      fansi_0.4.1        crayon_1.3.4       dplyr_1.0.2        withr_2.3.0        later_1.1.0.1     
[49] bitops_1.0-6       grid_4.0.2         crul_1.0.0         nlme_3.1-148       jsonlite_1.7.1     xtable_1.8-4       lifecycle_0.2.0    magrittr_1.5      
[57] cli_2.1.0          stringi_1.5.3      fs_1.5.0           promises_1.1.1     remotes_2.2.0      doParallel_1.0.15  testthat_3.0.0     xml2_1.3.2        
[65] osfr_0.2.8         ellipsis_0.3.1     vctrs_0.3.4        generics_0.1.0     prospectr_0.2.1    RColorBrewer_1.1-2 iterators_1.0.13   tools_4.0.2       
[73] bold_1.1.0         glue_1.4.2         purrr_0.3.4        processx_3.4.4     pkgload_1.1.0      parallel_4.0.2     fastmap_1.0.1      sessioninfo_1.1.1 
[81] memoise_1.1.0      usethis_1.6.3
sckott commented 3 years ago

ping @FranzKrah