Fix pkgdown configuration for reference

[maelle]

Some topics are missing from the configuration file.

 Error in check_missing_topics(rows, pkg) : 
  All topics must be included in reference index
• Missing topics: taxize_options

Note that for topics you do not want to include in the index you can create an "internal" section https://pkgdown.r-lib.org/reference/build_reference.html?q=internal#missing-topics

To check all topics are listed, after editing the configuration file you can run pkgdown::check_pkgdown().

[maelle]

@zachary-foster

[zachary-foster]

Thanks for the report! I just got back from vacation so I have not had a chance to look at this yet. I will look into this tomorrow.

[zachary-foster]

Ok, should be fixed. I assume that pkgdown is being run automatically by ropensci to produce this?

https://docs.ropensci.org/taxize/reference/index.html

[maelle]

Thank you!!

Yes, by R-universe: https://ropensci.org/blog/2021/09/03/runiverse-docs/

You can see the status in each commit status (screenshot below) and on the dashboard: https://ropensci.r-universe.dev/ui#builds

(By the way I see a GHA failure)