get_tsn() Error with tibble >= 3.0

On the latest dev version. e.g. the call to ritis gives an error https://github.com/ropensci/ritis/issues/26

get_tsn("Boleophthalmus dussumieri")

══  1 queries  ═══════════════

Retrieving data for taxon 'Boleophthalmus dussumieri'

Error:
! The `x` argument of `as_tibble()` can't be missing as of tibble
  3.0.0.
Backtrace:
 1. taxize::get_tsn("Boleophthalmus dussumieri")
 2. ritis::terms(sci_com[i], what = searchtype, ...)
 3. base::lapply(query, fun, wt = wt, raw = raw, ...)
 4. ritis (local) FUN(X[[i]], ...)
 5. ritis:::parse_raw(out)
 7. tibble:::as_tibble.NULL()
 8. lifecycle::deprecate_stop("3.0.0", "as_tibble(x = 'can\\'t be missing')")
 9. lifecycle:::deprecate_stop0(msg)

Session Info

```r > sessionInfo() R version 4.3.2 (2023-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19045) Matrix products: default locale: [1] LC_COLLATE=Estonian_Estonia.utf8 LC_CTYPE=Estonian_Estonia.utf8 [3] LC_MONETARY=Estonian_Estonia.utf8 LC_NUMERIC=C [5] LC_TIME=Estonian_Estonia.utf8 time zone: Europe/Tallinn tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] taxize_0.9.100 loaded via a namespace (and not attached): [1] gridExtra_2.3 remotes_2.4.2.1 inline_0.3.19 sandwich_3.0-2 [5] readxl_1.4.3 rlang_1.1.2 magrittr_2.0.3 multcomp_1.4-25 [9] matrixStats_1.1.0 compiler_4.3.2 loo_2.6.0 callr_3.7.3 [13] vctrs_0.6.4 reshape2_1.4.4 httpcode_0.3.0 stringr_1.5.1 [17] pkgconfig_2.0.3 crayon_1.5.2 fastmap_1.1.1 backports_1.4.1 [21] ellipsis_0.3.2 pander_0.6.5 utf8_1.2.4 threejs_0.3.3 [25] promises_1.2.1 markdown_1.11 ps_1.7.5 xfun_0.41 [29] jsonlite_1.8.7 later_1.3.1 parallel_4.3.2 prettyunits_1.2.0 [33] R6_2.5.1 dygraphs_1.1.1.6 stringi_1.8.1 StanHeaders_2.26.28 [37] cellranger_1.1.0 estimability_1.4.1 knitr_1.45 iterators_1.0.14 [41] Rcpp_1.0.11 rstan_2.32.3 triebeard_0.4.1 zoo_1.8-12 [45] base64enc_0.1-3 bayesplot_1.10.0 httpuv_1.6.12 Matrix_1.6-3 [49] splines_4.3.2 igraph_1.5.1 tidyselect_1.2.0 rstudioapi_0.15.0 [53] abind_1.4-5 codetools_0.2-19 miniUI_0.1.1.1 curl_5.1.0 [57] processx_3.8.2 pkgbuild_1.4.2 lattice_0.22-5 tibble_3.2.1 [61] plyr_1.8.9 shiny_1.8.0 bridgesampling_1.1-2 posterior_1.5.0 [65] coda_0.19-4 survival_3.5-7 RcppParallel_5.1.7 xml2_1.3.5 [69] xts_0.13.1 pillar_1.9.0 ritis_1.0.0 tensorA_0.36.2 [73] foreach_1.5.2 checkmate_2.3.0 DT_0.30 stats4_4.3.2 [77] shinyjs_2.1.0 distributional_0.3.2 generics_0.1.3 ggplot2_3.4.4 [81] rstantools_2.3.1.1 munsell_0.5.0 scales_1.2.1 gtools_3.9.4 [85] xtable_1.8-4 glue_1.6.2 emmeans_1.8.9 tools_4.3.2 [89] shinystan_2.6.0 data.table_1.14.8 colourpicker_1.3.0 mvtnorm_1.2-3 [93] grid_4.3.2 bold_1.3.0 ape_5.7-1 urltools_1.7.3 [97] QuickJSR_1.0.7 crosstalk_1.2.0 colorspace_2.1-0 nlme_3.1-163 [101] cli_3.6.1 fansi_1.0.5 solrium_1.2.0 Brobdingnag_1.2-9 [105] dplyr_1.1.4 V8_4.4.0 gtable_0.3.4 digest_0.6.33 [109] crul_1.4.0 TH.data_1.1-2 brms_2.20.4 htmlwidgets_1.6.3 [113] farver_2.1.1 htmltools_0.5.7 lifecycle_1.0.4 mime_0.12 [117] shinythemes_1.2.0 MASS_7.3-60 ```

Thanks for the report! I am not able to reproduce this error. Is this the CRAN version or the current Github version?

library(taxize)
get_tsn("Boleophthalmus dussumieri")
#> ══  1 queries  ═══════════════
#> 
#> Retrieving data for taxon 'Boleophthalmus dussumieri'
#> ✔  Found:  Boleophthalmus dussumieri
#> ══  Results  ═════════════════
#> 
#> • Total: 1 
#> • Found: 1 
#> • Not Found: 0
#> [1] "637041"
#> attr(,"class")
#> [1] "tsn"
#> attr(,"match")
#> [1] "found"
#> attr(,"multiple_matches")
#> [1] FALSE
#> attr(,"pattern_match")
#> [1] FALSE
#> attr(,"uri")
#> [1] "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=637041"
sessionInfo()
#> R version 4.3.2 (2023-10-31)
#> Platform: x86_64-pc-linux-gnu (64-bit)
#> Running under: Pop!_OS 22.04 LTS
#> 
#> Matrix products: default
#> BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0
#> 
#> locale:
#>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
#>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
#>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
#>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
#>  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
#> 
#> time zone: America/Los_Angeles
#> tzcode source: system (glibc)
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> other attached packages:
#> [1] taxize_0.9.100
#> 
#> loaded via a namespace (and not attached):
#>  [1] bold_1.3.0        solrium_1.2.0     jsonlite_1.8.7    dplyr_1.1.4      
#>  [5] compiler_4.3.2    crayon_1.5.2      tidyselect_1.2.0  reprex_2.0.2     
#>  [9] Rcpp_1.0.11       xml2_1.3.5        urltools_1.7.3    parallel_4.3.2   
#> [13] triebeard_0.4.1   yaml_2.3.7        fastmap_1.1.1     lattice_0.22-5   
#> [17] plyr_1.8.9        R6_2.5.1          generics_0.1.3    curl_5.1.0       
#> [21] knitr_1.45        iterators_1.0.14  tibble_3.2.1      ritis_1.0.0      
#> [25] crul_1.4.0        pillar_1.9.0      rlang_1.1.2       utf8_1.2.4       
#> [29] httpcode_0.3.0    stringi_1.8.2     xfun_0.41         fs_1.6.3         
#> [33] cli_3.6.1         magrittr_2.0.3    withr_2.5.2       digest_0.6.33    
#> [37] foreach_1.5.2     grid_4.3.2        rstudioapi_0.15.0 lifecycle_1.0.4  
#> [41] nlme_3.1-163      vctrs_0.6.4       evaluate_0.23     glue_1.6.2       
#> [45] data.table_1.14.8 codetools_0.2-19  zoo_1.8-12        fansi_1.0.5      
#> [49] ape_5.7-1         rmarkdown_2.25    pkgconfig_2.0.3   tools_4.3.2      
#> [53] htmltools_0.5.7

^{Created on 2023-11-30 with reprex v2.0.2}

ropensci / taxize

get_tsn() Error with tibble >= 3.0 #921