ropensci / taxizedb

Tools for Working with Taxonomic SQL Databases
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Prepare GBIF SQLite database locally #77

Closed stitam closed 3 months ago

stitam commented 4 months ago

Related to issues #63, #69, #76.

db_download_gbif() downloads an SQLite version of GBIF from Amazon S3. This SQLite version is automatically updated every day using this pipeline: https://github.com/sckott/gbif-backbone-sql. However, every now and then the automatic update fails. In contrast with this approach, db_download_ncbi() for example prepares the NCBI SQLite database locally on the user's platform.

While db_download_gbif() generally works, adding R functionality to prepare this database locally would simplify repo maintainance (fewer repos, fewer languages, no webservices required).