Wrong walltime for torque?

[naumenko-sa]

Hi Rory!

I'm running

bcbio_nextgen.py ../config/NA12878-exome-methodcmp.yaml -t ipython -n 10 -s torque -q all

just to start with parallel version, and it produces job files for torque_controller and torque_engines with walltime=239:00:00, but for 'all' queue the maximum walltime is 23:59:59, and the controller is not starting.

Is it possible to tune the walltime parameter?

Thanks! Sergey

[naumenko-sa]

bcbio_nextgen.py ../config/NA12878-exome-methodcmp.yaml -t ipython -n 10 -s torque -q batch -r walltime=4:00:00 --timeout 30