problem with sedchange

[veronicas87]

Hi, i m trying to include sedchange in serac. Before to add the sedchange string in the model, i have no problem, the model is working well and i have good results, after using sedchage=c(XX), the model is not working. there are not outputs. Do u have any suggestions? thanks a lot for the help.

[rosalieb]

Hello, Just trying the easy trouble shooting options first:

• Make sure you spell out 'sedchange' the proper way (in your message, you wrote 'sedchage').
• Make sure you put the sedchange value as a numeric vector, and not some text, i.e., c(43, 55) and not c("43", "55").

If this did not work, try running the example included in the vignette:

# Install serac
devtools::install_github("rosalieb/serac", build_vignettes = TRUE)
library(serac)
# Create folders
dir.create(file.path(getwd(), 'Cores'), showWarnings = FALSE)
dir.create(file.path(paste0(getwd(),'/Cores'), 'serac_example_ALO09P12'), showWarnings = FALSE)
# Write in data
write.table(x = serac_example_ALO09P12, file = paste0(getwd(),'/Cores/serac_example_ALO09P12/serac_example_ALO09P12.txt'),col.names = T, row.names = F,sep="\t")
# Run the basic model
serac(name="serac_example_ALO09P12",coring_yr=2009,save_code=FALSE)
# Try adding some sedchange
serac(name="serac_example_ALO09P12",coring_yr=2009,save_code=FALSE, sedchange = 54)
serac(name="serac_example_ALO09P12",coring_yr=2009,save_code=FALSE, sedchange = 112)

If the example works, but you still cannot fix your code, please send me your formated input data file and the exact serac() code you wrote, and I will help troubleshoot. Best, Rosalie

[veronicas87]

Hi, Thanks a lot! I will running your example and if is not working, i will send u the code and input data file. Thanks againg, Best Veronica

Inviato da iPhone

Il giorno 5 ott 2022, alle ore 14:57, Rosalie Bruel @.***> ha scritto:

 Hello, Just trying the easy trouble shooting options first:

Make sure you spell out 'sedchange' the proper way (in your message, you wrote 'sedchage'). Make sure you put the sedchange value as a numeric vector, and not some text, i.e., c(43, 55) and not c("43", "55"). If this did not work, try running the example included in the vignette:

Install serac

devtools::install_github("rosalieb/serac", build_vignettes = TRUE) library(serac)

Create folders

dir.create(file.path(getwd(), 'Cores'), showWarnings = FALSE) dir.create(file.path(paste0(getwd(),'/Cores'), 'serac_example_ALO09P12'), showWarnings = FALSE)

Write in data

write.table(x = serac_example_ALO09P12, file = paste0(getwd(),'/Cores/serac_example_ALO09P12/serac_example_ALO09P12.txt'),col.names = T, row.names = F,sep="\t")

Run the basic model

serac(name="serac_example_ALO09P12",coring_yr=2009,save_code=FALSE)

Try adding some sedchange

serac(name="serac_example_ALO09P12",coring_yr=2009,save_code=FALSE, sedchange = 54) serac(name="serac_example_ALO09P12",coring_yr=2009,save_code=FALSE, sedchange = 112) If the example works, but you still cannot fix your code, please send me your formated input data file and the exact serac() code you wrote, and I will help troubleshoot. Best, Rosalie

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[rosalieb]

Closing this as I did not hear back from the user.