C. Elegans example, large chunk missing after calculation

rosalindfranklininstitute / RedLionfish

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C. Elegans example, large chunk missing after calculation #10

Closed perdigao1 closed 2 years ago

perdigao1 commented 2 years ago

Just tried to run RedLionfish on the publicaly avaialble dataset of C Elegans

http://bigwww.epfl.ch/deconvolution/bio/

with respective PSF, and a large chunk was cropped of. Not sure what went wrong here.

The PSF is as large as the dataset, so the problem could be related to this

perdigao1 commented 2 years ago

Resolved. There was an issue because the PSF has the same size as the image. By being both large it was automatically trying to run block deconvolution, which doesn't make sense to use in PSF = data sizes. Resolved, if it fails GPU without block deconvolution just falls back to CPU calculation