In file src/parakeet/metadata.py, the arguments --directory and --relion are not passed from function export() to functionexport_Config()`.
Single line fix of line 283 from return _export_Config(config, sample) to return _export_Config(config, sample, directory, relion) should fix this.
Test via parakeet.metadata.export -c config.yaml -s sample.h5 --directory new_dir --relion True or similar. Metadata output should now be created in directory new_dir/relion instead of relion
In file
src/parakeet/metadata.py, the arguments--directoryand--relionare not passed from functionexport()tofunctionexport_Config()`.Single line fix of line 283 from
return _export_Config(config, sample)toreturn _export_Config(config, sample, directory, relion)should fix this.Test via
parakeet.metadata.export -c config.yaml -s sample.h5 --directory new_dir --relion Trueor similar. Metadata output should now be created in directorynew_dir/relioninstead ofrelion