search

rosebaesj / omega3

0 stars 0 forks source link

number of species differenct #1

Open rosebaesj opened 2 years ago

rosebaesj commented 2 years ago

line 135 dim(all_species)

[1] 468 929

sunjeong: [1] 543 929

line 144 dim(all_species)

[1] 468 925

sunjeong: [1] 543 925

line 151 dim(all_species[apply(all_species, 1, function(bug) sum(bug >= 0.01) >= 0.1*ncol(all_species)), ])

[1] 139 925 = the 139 species after QC included in initial starr manuscripts

sunjeong: [1] 156 925

rosebaesj commented 2 years ago

possible answer: the metaphlan_taxonomic_profiles.tsv may have been updated