Issue with creating the environment using smk.ywl

Hello,

I am having trouble using your YAML file to create the extension. According to this thread on Stack Overflow, it might be a bug coming from using conda export.

Can you please update the smk.yml file by using the -- no-builds flag to see if it will help?

For more information: I run: conda env create -f smk.yml --name smk on my macOs Catalina, version 10.15. 5 | in both python 2.7 and python 3 conda environment. I get: `Collecting package metadata (repodata.json): done Solving environment: failed

ResolvePackageNotFound:

tbb==2019.7=hc9558a2_0
r-data.table==1.12.2=r36h96ca727_0
mpfr==4.0.1=hdf1c602_3
libxcb==1.13=h1bed415_1
freetype==2.9.1=h8a8886c_1
llvmlite==0.29.0=py37hd408876_0
r-rcpp==1.0.1=r36h29659fb_0
gxx_impl_linux-64==7.3.0=hdf63c60_1
numpy==1.16.4=py37h7e9f1db_0
cython==0.29.12=py37he6710b0_0
pycurl==7.43.0.3=py37h1ba5d50_0
r-spatial==7.3_11=r36h96ca727_4
bottleneck==1.2.1=py37h035aef0_1
mkl_fft==1.0.12=py37ha843d7b_0
r-ps==1.3.0=r36h96ca727_0
gmpy2==2.0.8=py37h10f8cd9_2
binutils_impl_linux-64==2.31.1=h6176602_1
r-colorspace==1.4_1=r36h96ca727_0
libarchive==3.3.3=h5d8350f_5
aiohttp==3.5.4=py37h14c3975_0
r-markdown==0.9=r36h96ca727_0
r-scales==1.0.0=r36h29659fb_0
r-readr==1.3.1=r36h29659fb_0
gevent==1.4.0=py37h7b6447c_0
r-curl==3.3=r36h96ca727_0
statsmodels==0.10.0=py37hdd07704_0
lz4-c==1.8.1.2=h14c3975_0
lazy-object-proxy==1.4.1=py37h7b6447c_0
r-digest==0.6.18=r36h96ca727_0
r-ellipsis==0.1.0=r36h96ca727_0
tk==8.6.8=hbc83047_0
r-mgcv==1.8_28=r36h96ca727_0
mkl-service==2.0.2=py37h7b6447c_0
fastcache==1.1.0=py37h7b6447c_0
gcc_impl_linux-64==7.3.0=habb00fd_1
pygraphviz==1.3=py37h14c3975_1
cairo==1.14.12=h8948797_3
r-glue==1.3.1=r36h96ca727_0
pyodbc==4.0.26=py37he6710b0_0
graphviz==2.40.1=h21bd128_2
tktable==2.10=h14c3975_0
zeromq==4.3.1=he6710b0_3
scipy==1.3.0=py37h7c811a0_0
pyyaml==5.1.1=py37h7b6447c_0
psutil==5.6.3=py37h7b6447c_0
r-plyr==1.8.4=r36h29659fb_0
r-openssl==1.3=r36h96ca727_0
intel-openmp==2019.4=243
r-tidyselect==0.2.5=r36h29659fb_0
h5py==2.9.0=py37h7918eee_0
openssl==1.1.1c=h7b6447c_1
qt==5.9.7=h5867ecd_1
get_terminal_size==1.0.0=haa9412d_0
kiwisolver==1.1.0=py37he6710b0_0
mpc==1.1.0=h10f8cd9_1
pyzmq==18.0.0=py37he6710b0_0
blosc==1.16.3=hd408876_0
wrapt==1.11.2=py37h7b6447c_0
liblief==0.9.0=h7725739_2
pillow==6.1.0=py37h34e0f95_0
r-lazyeval==0.2.2=r36h96ca727_0
mkl_random==1.0.2=py37hd81dba3_0
libstdcxx-ng==9.1.0=hdf63c60_0
bitarray==0.9.3=py37h7b6447c_0
cryptography==2.7=py37h1ba5d50_0
r-tidyr==0.8.3=r36h29659fb_0
cytoolz==0.10.0=py37h7b6447c_0
pandas==0.24.2=py37he6710b0_0
r-matrix==1.2_17=r36h96ca727_0
yaml==0.1.7=had09818_2
sqlite==3.29.0=h7b6447c_0
r-foreign==0.8_71=r36h96ca727_0
unixodbc==2.3.7=h14c3975_0
r-askpass==1.0=r36h14c3975_0
gst-plugins-base==1.14.0=hbbd80ab_1
hdf5==1.10.4=hb1b8bf9_0
numba==0.44.1=py37h962f231_0
r-processx==3.3.0=r36h96ca727_0
libgcc-ng==9.1.0=hdf63c60_0
biopython==1.74=py37h7b6447c_0
r-nnet==7.3_12=r36h96ca727_0
r-lubridate==1.7.4=r36h29659fb_0
gmp==6.1.2=h6c8ec71_1
r-readxl==1.3.1=r36h29659fb_0
markupsafe==1.1.1=py37h7b6447c_0
pyqt==5.9.2=py37h05f1152_2
sqlalchemy==1.3.5=py37h7b6447c_0
gcc_linux-64==7.3.0=h553295d_8
matplotlib==3.1.0=py37h5429711_0
r-rpart==4.1_15=r36h96ca727_0
jbig==2.1=hdba287a_0
libtiff==4.0.10=h2733197_2
r-lattice==0.20_38=r36h96ca727_0
cffi==1.12.3=py37h2e261b9_0
fontconfig==2.13.0=h9420a91_0
curl==7.65.2=hbc83047_0
xz==5.2.4=h14c3975_4
libffi==3.2.1=hd88cf55_4
libpng==1.6.37=hbc83047_0
libxml2==2.9.9=hea5a465_1
py-lief==0.9.0=py37h7725739_2
readline==7.0=h7b6447c_5
snappy==1.1.7=hbae5bb6_3
jpeg==9b=h024ee3a_2
lzo==2.10=h49e0be7_2
zstd==1.3.7=h0b5b093_0
pynacl==1.3.0=py37h14c3975_1000
protobuf==3.9.1=py37he1b5a44_0
bcrypt==3.1.6=py37h516909a_1
make==4.2.1=h14c3975_2004
r-ggrepel==0.8.1=r36h0357c0b_1
r-base==3.6.1=hce969dd_0
greenlet==0.4.15=py37h7b6447c_0
gstreamer==1.14.0=hb453b48_1
r-purrr==0.3.2=r36h96ca727_0
bzip2==1.0.8=h7b6447c_0
patchelf==0.9=he6710b0_3
pywavelets==1.0.3=py37hdd07704_1
graphite2==1.3.13=h23475e2_0
r-xml2==1.2.0=r36h29659fb_0
scikit-learn==0.21.2=py37hd81dba3_0
glib==2.56.2=hd408876_0
r-utf8==1.1.4=r36h96ca727_0
libxslt==1.1.33=h7d1a2b0_0
r-mass==7.3_51.3=r36h96ca727_0
pixman==0.38.0=h7b6447c_0
dbus==1.13.6=h746ee38_0
msgpack-python==0.6.1=py37hfd86e86_1
r-backports==1.1.4=r36h96ca727_0
r-dplyr==0.8.0.1=r36h29659fb_0
datrie==0.8=py37h516909a_0
r-reshape2==1.4.3=r36h29659fb_0
libsodium==1.0.16=h1bed415_0
fribidi==1.0.5=h7b6447c_0
r-mime==0.6=r36h96ca727_0
python==3.7.3=h0371630_0
r-jsonlite==1.6=r36h96ca727_0
r-htmltools==0.3.6=r36h29659fb_0
r-nlme==3.1_139=r36ha65eedd_0
gxx_linux-64==7.3.0=h553295d_8
gsl==2.4=h294904e_1006
ruamel_yaml==0.15.46=py37h14c3975_0
gfortran_linux-64==7.3.0=h553295d_8
pango==1.42.4=h049681c_0
r-haven==2.1.0=r36h29659fb_0
sip==4.19.8=py37hf484d3e_0
lxml==4.3.4=py37hefd8a0e_0
libprotobuf==3.9.1=h8b12597_0
pyrsistent==0.14.11=py37h7b6447c_0
astropy==3.2.1=py37h7b6447c_0
pytables==3.5.2=py37h71ec239_1
r-fs==1.2.7=r36h29659fb_0
ncurses==6.1=he6710b0_1
pycrypto==2.6.1=py37h14c3975_9
libgfortran-ng==7.3.0=hdf63c60_0
mkl==2019.4=243
r-rlang==0.3.4=r36h96ca727_0
yarl==1.3.0=py37h14c3975_1000
secretstorage==3.1.1=py37_0
r-fansi==0.4.0=r36h96ca727_0
gfortran_impl_linux-64==7.3.0=hdf63c60_1
multidict==4.5.2=py37h14c3975_1000
numpy-base==1.16.4=py37hde5b4d6_0
r-survival==2.44_1.1=r36h96ca727_0
libcurl==7.65.2=h20c2e04_0
binutils_linux-64==2.31.1=h6176602_8
zlib==1.2.11=h7b6447c_3
libssh2==1.8.2=h1ba5d50_0
libtool==2.4.6=h7b6447c_5
numexpr==2.6.9=py37h9e4a6bb_0
pcre==8.43=he6710b0_0
r-cluster==2.0.8=r36ha65eedd_0
libuuid==1.0.3=h1bed415_2
pycosat==0.6.3=py37h14c3975_0
icu==58.2=h9c2bf20_1
r-kernsmooth==2.23_15=r36ha65eedd_4
r-tibble==2.1.1=r36h96ca727_0
krb5==1.16.1=h173b8e3_7
scikit-image==0.15.0=py37he6710b0_0
tornado==6.0.3=py37h7b6447c_0
r-sys==3.2=r36h96ca727_0
r-class==7.3_15=r36h96ca727_0
libedit==3.1.20181209=hc058e9b_0
r-stringi==1.4.3=r36h29659fb_0
r-yaml==2.2.0=r36h96ca727_0
harfbuzz==1.8.8=hffaf4a1_0
expat==2.2.6=he6710b0_0
mistune==0.8.4=py37h7b6447c_0
r-base64enc==0.1_3=r36h96ca727_4`

rostkick / Halide_sites

Issue with creating the environment using smk.ywl #3