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rotary-genomics / rotary

Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements
BSD 3-Clause "New" or "Revised" License
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Move to Snakemake 8.0 #111

Open LeeBergstrand opened 6 months ago

LeeBergstrand commented 6 months ago

@jmtsuji So Snakemake 8.0 just came out.

https://snakemake.readthedocs.io/en/stable/getting_started/migration.html

It has a lot of changes and breaking Syntax.

Note that it requires Python 3.11. However, Circulator requires pysam, which may have compatibility issues with newer versions of Python.

I think that once we move away from Circulator, we can move to Snakemake 8.0.

jmtsuji commented 5 months ago

Agreed -- let's plan to move to Snakelike 8.0 after moving away from Circulator