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rotary-genomics / rotary

Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements

BSD 3-Clause "New" or "Revised" License

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Closed LeeBergstrand closed 3 months ago

LeeBergstrand commented 4 months ago

various bug fixes to make the code compatible with the latest versions of pungi.
change the default medaka model to "r1041_e82_400bps_hac_v4.2.0"
add circularization TSV to the summary.zip

LeeBergstrand commented 3 months ago

@jmtsuji Left a comment above. Not sure of your intent in renaming "{sample}/assembly/{sample}_circular_info.tsv".

jmtsuji commented 3 months ago

@jmtsuji Left a comment above. Not sure of your intent in renaming "{sample}/assembly/{sample}_circular_info.tsv".

@LeeBergstrand Just replied above -- thanks.

LeeBergstrand commented 3 months ago

@jmtsuji Are we ready to merge this in?