rotary-genomics / rotary

Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements
BSD 3-Clause "New" or "Revised" License
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Add Checkm2 db version to Checkm2 database #166

Open LeeBergstrand opened 2 months ago

LeeBergstrand commented 2 months ago

Problem Description

When the checkm2 database is downloaded, no version label is applied to the db directory. This could lead to a situation where checkm2 gets updated but runs off an old DB. This could lead to errors.

Proposed Solution

We add the checkm2 version as a global variable to create the database. This would follow the current design pattern used by DFAST, GTDB, and Eggnog