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rotary-genomics / rotary

Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements
BSD 3-Clause "New" or "Revised" License
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Snakemake 8 #186

Closed LeeBergstrand closed 2 weeks ago

LeeBergstrand commented 1 month ago

Modify the code to work with snakemake version 8, a significant non-backwards compatible version update.

Addresses issue: https://github.com/rotary-genomics/rotary/issues/111

Being done in coordination with https://github.com/rotary-genomics/pungi/pull/4

LeeBergstrand commented 1 month ago

@jmtsuji Passes a run of rotary.