Check if decontamination genome references need to be in forward and reverse complement orientation

rotary-genomics / rotary

Assembly/annotation workflow for Nanopore-based microbial genome data containing circular DNA elements

BSD 3-Clause "New" or "Revised" License

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Check if decontamination genome references need to be in forward and reverse complement orientation #93

Open jmtsuji opened 9 months ago

jmtsuji commented 9 months ago

Is this necessary for decontamination to work properly, or does bbduk include the forward and reverse complement by default? We need to check on this.