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rothlab / chromozoom

ChromoZoom is a fast, fluid web-based genome browser
http://chromozoom.org
GNU Affero General Public License v3.0
47 stars 5 forks source link

cannot create yaml configuration file #4

Closed jzhoupu closed 10 years ago

jzhoupu commented 10 years ago

I found that chromozoom gives the best user experience I have ever had on a genome browser. So I really want to use it to demo some of my own tracks. I installed it after cloning the most recent version from github. But I cannot go through the first few steps of creating yaml configuration file. e.g if I use rake config[dm3], I got the following error:

Fetched information for 15 chromosomes rake aborted! can't convert Float into String

Tasks: TOP => dm3.yaml (See full trace by running task with --trace)

powerpak commented 10 years ago

Hi @jzhoupu, thanks for the good words. I think I fixed this with 5943a6eb0eb9ffa23596f77a18f2eabcc973f073. It looks like Ruby >=1.9.3 uses Psych as the default YAML engine and this was tripping up some formatting tricks that were being used for YAML output. Hope this helps.

jzhoupu commented 10 years ago

Thanks a lot! I will try it out. Jian

On Mon, Jul 21, 2014 at 2:25 PM, Theodore Pak notifications@github.com wrote:

Closed #4 https://github.com/rothlab/chromozoom/issues/4.

— Reply to this email directly or view it on GitHub https://github.com/rothlab/chromozoom/issues/4#event-143822090.