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royerlab
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cytoself
Self-supervised models for encoding protein localization patterns from microscopy images
BSD 3-Clause "New" or "Revised" License
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PyTorch Cytoself Model Weights
#39
Lilferrit
opened
1 week ago
0
Cl fig s6
#38
chad-liu-cz
opened
4 months ago
0
Setup of full .npy dataset?
#37
amulyagarimella
closed
9 months ago
2
Labels that don't match up with available images
#36
amulyagarimella
closed
9 months ago
3
added known issues in README.md
#35
li-li-github
closed
11 months ago
1
fixed a bug in README.md
#34
li-li-github
closed
11 months ago
1
Pickling error running CytoselfFullTrainer
#33
sheryllin111
opened
11 months ago
2
PicklingError: Can't pickle <function DataManagerOpenCell.<lambda>
#32
gitclipp
opened
11 months ago
3
Reset early stop counting
#31
li-li-github
closed
1 year ago
1
Suggest setting the exact package version for torch in requirements.txt
#30
jmhb0
closed
1 year ago
2
Early stopping does not count consecutive steps on pytorch branch
#29
jmhb0
closed
1 year ago
2
Packages missing + embedding_dim is required for vq_args
#28
sheryllin111
closed
12 months ago
1
UMap not looking good
#27
sofroniewn
closed
1 year ago
14
ModuleNotFoundError: No module named 'cytoself.datamanager'
#26
dedy1179
opened
1 year ago
1
Release trained model weights
#25
sofroniewn
closed
1 year ago
1
Variance normalization
#24
sofroniewn
closed
1 year ago
4
Dataloader for full dataset
#23
sofroniewn
closed
1 year ago
7
Updated development requirements and pre-commit
#22
li-li-github
closed
1 year ago
1
Nuclear segmentation mask for the original resolution images
#21
xinyiz98
opened
1 year ago
1
Fixed several bugs in models & trainers
#20
li-li-github
closed
1 year ago
1
The difference between tensorflow and pytorch version
#19
exogeny
closed
1 year ago
2
Bump protobuf from 3.20 to 3.20.2 in /requirements
#18
dependabot[bot]
closed
1 year ago
1
train！
#17
Valort-KT
closed
1 year ago
2
Loss weights for optimal training
#16
parthnatekar
opened
1 year ago
1
fixed python3.9 installation in simple_example.ipynb
#15
li-li-github
closed
1 year ago
0
Fixlink
#14
li-li-github
closed
1 year ago
0
Added Jupyter notebook
#13
li-li-github
closed
1 year ago
0
Google drive links inaccessible/invalid for examples/simple_example
#12
winch-jm
closed
1 year ago
2
failure to run plot_clustermaps()
#11
bkang-mit
opened
1 year ago
1
added examples for plotting feature spectrum
#10
li-li-github
closed
1 year ago
0
modified doc string
#9
li-li-github
closed
1 year ago
0
Is there any initial file of the manual selected spectrum index?
#8
TerminatorJ
opened
1 year ago
1
How to normalize the nuclear distance channel?
#7
JimmyCai91
closed
1 year ago
5
Code about Nucleus Segmentation
#6
Yuangaga
closed
1 year ago
2
Installation
#5
JacobNeumann88
closed
1 year ago
5
best model wont rollback
#4
li-li-github
closed
2 years ago
0
Readme update
#3
li-li-github
closed
2 years ago
0
Added Data availability
#2
li-li-github
closed
2 years ago
0
Upgrade gdown version
#1
li-li-github
closed
2 years ago
0