royerlab / inTRACKtive

Interactive visualization and sharing of cell tracking data in the browser
https://intracktive.sf.czbiohub.org
MIT License
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Export to csv for import into napari #78

Closed ehoops-cz closed 5 months ago

ehoops-cz commented 6 months ago
aganders3 commented 6 months ago

addTrack may need to keep track of children tracks?

Just a note on this - I think the exact track "graph" is not available in the current file format. Fetching a row of tracks_to_tracks gets the full lineage, so the information about only direct children is lost. I think this could be encoded there without much (any) additional overheard (at least in storage), but I'd need to give it a little thought.

Export a list of trackIds only?

We also discussed making the "full" tracking CSV available for download along with this.

aganders3 commented 5 months ago

@ehoops-cz and I chatted about this last week. I think this can be done by adding the parent track ID as the data in the tracks_to_tracks table. Currently the data in that array is unused.