Bump `napari` to `0.5.0` and updated ultrack to use plugin menus

royerlab / ultrack

Cell tracking and segmentation software

https://royerlab.github.io/ultrack

BSD 3-Clause "New" or "Revised" License

86 stars 11 forks source link

Bump `napari` to `0.5.0` and updated ultrack to use plugin menus #128

Open JoOkuma opened 2 months ago

JoOkuma commented 2 months ago

More info about plugin menus: https://napari.org/dev/naps/6-contributable-menus.html

Example of refactoring: https://github.com/jni/affinder/pull/96

ilan-theodoro commented 2 months ago

I have a few questions. Currently, we have a list of six commands in the plugins menu:

Main widget
Labels to edges map
Segmentation hypothesis visualization
Node annotation
Division annotation
Track inspection

How would they be categorized? Will all of them be on the contributable menu? Is the following assignment okay?

napari/layers/track
napari/layers/filter
napari/layers/visualize
napari/layers/annotate
napari/layers/annotate
napari/layers/visualize

ilan-theodoro commented 2 months ago

@JoOkuma

JoOkuma commented 2 months ago

@ilan-theodoro, lets wait for #130 to be merged

JoOkuma commented 3 weeks ago

Since we merged #130 this can be done, @ilan-theodoro

I wouldn't include the auxiliary / deprecated widgets because they are not well maintained. I think a PR to fix this would just put UltrackWidget in the tracking category of the plugin menus.