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royerlab
/
ultrack
Cell tracking and segmentation software
https://royerlab.github.io/ultrack
BSD 3-Clause "New" or "Revised" License
64
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7
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Recommended image file formats
#67
tischi
opened
5 months ago
5
Additional gurobi documentation & improving pandas dependency
#66
JoOkuma
closed
5 months ago
0
Adding command to check gurobi setup and license
#65
JoOkuma
closed
5 months ago
3
Error when executing track functions
#64
brunicardoso
closed
5 months ago
9
Issues between pandas and sqlalchemy dependencies
#63
edyoshikun
closed
5 months ago
1
Add gurobi documentation
#62
tischi
opened
5 months ago
7
Fixed normalization for unsigned types
#61
JoOkuma
closed
5 months ago
1
Fix trackmate xml creation to be compatible with mastodon
#60
JoOkuma
closed
5 months ago
1
Fixing case senstive item in trackmate writer
#59
JoOkuma
closed
5 months ago
1
CLI export compatiblity with napari tracks reader plugin
#58
jackyko1991
closed
1 month ago
5
add API/CLI functionality to create SLURM scripts from configuration file and dataset
#57
JoOkuma
opened
6 months ago
0
improve documentation of `n_workers` and `batch_index` concurrent from command line interface
#56
JoOkuma
opened
6 months ago
0
Reproducing 2d stardist example conda env
#55
folterj
closed
4 months ago
4
Refactor `labels_to_edges` to use zarr temporary directory store by default
#54
JoOkuma
opened
6 months ago
0
Add option to `track` function where you can supply a grayscale or multi-color image
#53
JoOkuma
opened
6 months ago
0
Adding number of segments option to SQLTracking
#52
JoOkuma
closed
7 months ago
1
Add option to set number of segments per time point
#51
JoOkuma
closed
7 months ago
0
Add option to favour segmentations that keep the object shape as constant as possible
#50
tischi
opened
7 months ago
1
Updated cloud pickle to 3.0.0
#49
JoOkuma
closed
7 months ago
1
Getting in touch
#48
tischi
closed
7 months ago
2
Updated linking sqlite stale time wait
#47
JoOkuma
closed
8 months ago
1
Image features for additional tracking information
#46
jackyko1991
opened
8 months ago
0
Add export to trackmate format
#45
JoOkuma
closed
10 months ago
1
Release to pypi
#44
haesleinhuepf
closed
10 months ago
2
Makes solver more verbose
#43
JoOkuma
closed
10 months ago
1
Fixed data io when reading napari multiscale data
#42
JoOkuma
closed
11 months ago
1
Making default solver undefined
#41
JoOkuma
closed
1 year ago
1
User experience improvement in GenericAnnotationWidget
#40
ilan-theodoro
closed
1 year ago
1
NodeAnnotationWidget access to uninitialized _annot_w attribute
#39
ilan-theodoro
opened
1 year ago
0
Fix small bug of n-dimensional input in _generic_annotation_widget.py
#38
ilan-theodoro
closed
1 year ago
0
Using CBC solver when gurobi errors
#37
JoOkuma
closed
1 year ago
0
Forbiden extra parameters on config files
#36
JoOkuma
closed
1 year ago
1
Updated dependencies and fixed failing tests
#35
JoOkuma
closed
1 year ago
0
Calculates Euclidean distance more efficiently using `np.linalg.norm`
#34
ajinkya-kulkarni
closed
1 year ago
2
Refactored labels buffer from uint16 to int
#33
JoOkuma
closed
1 year ago
0
Updating documentation
#32
JoOkuma
closed
1 year ago
0
Fixing qt signal bug by pinning psygnal version
#31
JoOkuma
closed
1 year ago
1
Updated track selection ordering from longest length to avg length
#30
JoOkuma
closed
1 year ago
0
Optimizing sqlite insertions
#29
JoOkuma
closed
1 year ago
0
Update README.md
#28
AhmetCanSolak
closed
1 year ago
0
Refactor hierarchical segmentation max area filtering and oversegmentation
#27
JoOkuma
closed
1 year ago
1
Add parent track id option for tracks export
#26
JoOkuma
closed
1 year ago
1
Add track inspection napari plugin entrypoint
#25
JoOkuma
closed
1 year ago
1
Refactor CI so coverage is executed only once
#24
JoOkuma
closed
1 year ago
0
Add track inspection widget
#23
JoOkuma
closed
1 year ago
0
Refactor hierarchy cache and add dynamics to nodedb
#22
JoOkuma
closed
1 year ago
0
Add segmentation edge map additive noise option
#21
JoOkuma
closed
1 year ago
1
Add vector field (registration / shift) support
#20
JoOkuma
closed
1 year ago
1
Adding 3.11 support and reducing CI to save run time
#19
JoOkuma
closed
1 year ago
1
Fix CTC export minimum label uint16 dtype
#18
JoOkuma
closed
1 year ago
1
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