royfrancis / pophelperShiny

Interactive interface for pophelper using shiny web framework.
http://royfrancis.github.io/pophelperShiny/
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pophelper shiny connection issue #6

Open guinwogan opened 2 years ago

guinwogan commented 2 years ago

Suddenly I am not able to launch pophelpershiny, when I try to do so I get an error page in my browser and my Rsession aborts.

royfrancis commented 2 years ago

So, it used to work and now it has stopped working? Do you get any error messages? Perhaps some dependency has changed or got updated?

guinwogan commented 2 years ago

Yes it had been working well. So I guess it is something just on my end. I will do some troubleshooting, I probably updated something and messed up a dependency. Thanks, good to know it is a problem on my system.

On Mon, Dec 20, 2021 at 2:42 PM Roy Francis @.***> wrote:

So, it used to work and now it has stopped working? Do you get any error messages? Perhaps some dependency has changed or got updated?

— Reply to this email directly, view it on GitHub https://github.com/royfrancis/pophelperShiny/issues/6#issuecomment-998255501, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEAG4HIAOZP7WSO6ORQR7CTUR6INFANCNFSM5KOFJUFA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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-- Guinevere O.U. Wogan postdoctoral fellow ESPM University of California, Berkeley webpage: www.guinwogan.com

Assist. Professor (Jan.2021) Integrative Biology, Oklahoma State University

royfrancis commented 2 years ago

I did a quick check to install it locally for me and it seems to be working fine. So if you get any specific error messages or so, get back to me.

guinwogan commented 2 years ago

The only odd message I get is this prior to the "server is busy cant connect" and then the r session having a fatal error and aborting

library(pophelperShiny) Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo

runPophelper()

I didn't specifically install the quantmod package, it appears to be a dependency for highcharter which is a dependency of course for pophelpershiny.

Does this help in any way? I'm still stuck, I did a big package update to make sure everything is running the newest versions, but am still in the same boat.

On Mon, Dec 20, 2021 at 3:53 PM Roy Francis @.***> wrote:

I did a quick check to install it locally for me and it seems to be working fine. So if you get any specific error messages or so, get back to me.

— Reply to this email directly, view it on GitHub https://github.com/royfrancis/pophelperShiny/issues/6#issuecomment-998297744, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEAG4HJTP4BLLDD35SS3WJ3UR6QWFANCNFSM5KOFJUFA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Guinevere O.U. Wogan postdoctoral fellow ESPM University of California, Berkeley webpage: www.guinwogan.com

Assist. Professor (Jan.2021) Integrative Biology, Oklahoma State University

royfrancis commented 2 years ago

I see the same message about quantmod when I load the package. It's not ideal, but it doesn't seem to be an issue as far as I can see. Not really sure what is wrong. Alternatively, you can install it from conda in a conda environment. And another option would be to run it through docker.

guinwogan commented 2 years ago

Thanks for your advice. I just forced a new reinstall of pophelper and pophelpershiny (in R) and this time got the following error. Listening on http://127.0.0.1:7578 Error in execCallbacks(timeoutSecs, all, loop$id) : timespec_get failed later: exception occurred while executing callback: timespec_get failed

On Tue, Dec 21, 2021 at 2:45 AM Roy Francis @.***> wrote:

I see the same message about quantmod when I load the package. It's not ideal, but it doesn't seem to be an issue as far as I can see. Not really sure what is wrong. Alternatively, you can install it from conda https://anaconda.org/royfrancis/r-pophelpershiny in a conda environment. And another option would be to run it through docker http://www.royfrancis.com/pophelperShiny/.

— Reply to this email directly, view it on GitHub https://github.com/royfrancis/pophelperShiny/issues/6#issuecomment-998582656, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEAG4HNFAZLLKR2IAK3E2W3USA5DZANCNFSM5KOFJUFA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Guinevere O.U. Wogan postdoctoral fellow ESPM University of California, Berkeley webpage: www.guinwogan.com

Assist. Professor (Jan.2021) Integrative Biology, Oklahoma State University

royfrancis commented 2 years ago

No idea what this error is about. Some googling seems to suggest the later package may have something to do it. Perhaps, try updating that package and then generally all packages.