pophelper shiny connection issue

[guinwogan]

Suddenly I am not able to launch pophelpershiny, when I try to do so I get an error page in my browser and my Rsession aborts.

[royfrancis]

So, it used to work and now it has stopped working? Do you get any error messages? Perhaps some dependency has changed or got updated?

[guinwogan]

Yes it had been working well. So I guess it is something just on my end. I will do some troubleshooting, I probably updated something and messed up a dependency. Thanks, good to know it is a problem on my system.

On Mon, Dec 20, 2021 at 2:42 PM Roy Francis @.***> wrote:

So, it used to work and now it has stopped working? Do you get any error messages? Perhaps some dependency has changed or got updated?

— Reply to this email directly, view it on GitHub https://github.com/royfrancis/pophelperShiny/issues/6#issuecomment-998255501, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEAG4HIAOZP7WSO6ORQR7CTUR6INFANCNFSM5KOFJUFA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

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Assist. Professor (Jan.2021) Integrative Biology, Oklahoma State University

[royfrancis]

I did a quick check to install it locally for me and it seems to be working fine. So if you get any specific error messages or so, get back to me.

[guinwogan]

The only odd message I get is this prior to the "server is busy cant connect" and then the r session having a fatal error and aborting

library(pophelperShiny) Registered S3 method overwritten by 'quantmod': method from as.zoo.data.frame zoo

runPophelper()

I didn't specifically install the quantmod package, it appears to be a dependency for highcharter which is a dependency of course for pophelpershiny.

Does this help in any way? I'm still stuck, I did a big package update to make sure everything is running the newest versions, but am still in the same boat.

On Mon, Dec 20, 2021 at 3:53 PM Roy Francis @.***> wrote:

I did a quick check to install it locally for me and it seems to be working fine. So if you get any specific error messages or so, get back to me.

— Reply to this email directly, view it on GitHub https://github.com/royfrancis/pophelperShiny/issues/6#issuecomment-998297744, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEAG4HJTP4BLLDD35SS3WJ3UR6QWFANCNFSM5KOFJUFA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Guinevere O.U. Wogan postdoctoral fellow ESPM University of California, Berkeley webpage: www.guinwogan.com

Assist. Professor (Jan.2021) Integrative Biology, Oklahoma State University

[royfrancis]

I see the same message about quantmod when I load the package. It's not ideal, but it doesn't seem to be an issue as far as I can see. Not really sure what is wrong. Alternatively, you can install it from conda in a conda environment. And another option would be to run it through docker.

[guinwogan]

Thanks for your advice. I just forced a new reinstall of pophelper and pophelpershiny (in R) and this time got the following error. Listening on http://127.0.0.1:7578 Error in execCallbacks(timeoutSecs, all, loop$id) : timespec_get failed later: exception occurred while executing callback: timespec_get failed

On Tue, Dec 21, 2021 at 2:45 AM Roy Francis @.***> wrote:

I see the same message about quantmod when I load the package. It's not ideal, but it doesn't seem to be an issue as far as I can see. Not really sure what is wrong. Alternatively, you can install it from conda https://anaconda.org/royfrancis/r-pophelpershiny in a conda environment. And another option would be to run it through docker http://www.royfrancis.com/pophelperShiny/.

— Reply to this email directly, view it on GitHub https://github.com/royfrancis/pophelperShiny/issues/6#issuecomment-998582656, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEAG4HNFAZLLKR2IAK3E2W3USA5DZANCNFSM5KOFJUFA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you authored the thread.Message ID: @.***>

-- Guinevere O.U. Wogan postdoctoral fellow ESPM University of California, Berkeley webpage: www.guinwogan.com

Assist. Professor (Jan.2021) Integrative Biology, Oklahoma State University

[royfrancis]

No idea what this error is about. Some googling seems to suggest the later package may have something to do it. Perhaps, try updating that package and then generally all packages.