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royludo / cd2sbgnml

Translation between CellDesigner-flavoured SBML and SBGN-ML
https://royludo.github.io/cd2sbgnml
GNU Lesser General Public License v3.0
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reaction node labels lost in translation #7

Open ghost opened 6 years ago

ghost commented 6 years ago

Hi

I noticed that the reaction node labels, i.e. the reaction names like "PGMT" do not get transferred to the GraphML files produced. It is captured in the SBGN but not the GraphML

Step1_ReconMap_2.01_Original.xml image

Step2_ReconMap_SBGN_from_CellDesigner.sbgn, PGMT is node="pr_4e79f0a2-236d-4abd-918e-2a94b664eb90" image

Step3_ReconMap_yEd_from_SBGN.graphml image

Thank you.

royludo commented 6 years ago

@kengcher are you sure this issue is related to cd2sbgnml and not something that happens during GraphML conversion ? GraphML is outside of the scope of this repository.