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royludo / cd2sbgnml

Translation between CellDesigner-flavoured SBML and SBGN-ML
https://royludo.github.io/cd2sbgnml
GNU Lesser General Public License v3.0
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Parent - child relation inconsistency #9

Open ugurdogrusoz opened 6 years ago

ugurdogrusoz commented 6 years ago

When you import from the CellDesigner sample M_phase.xml, pretty much all nodes except the process nodes go into the single compartment but not the process nodes. If there is no direct way to infer this from CD file, one could check the substrates and products of each process and if they all belong to the same compartment, the process could also be placed there.

royludo commented 6 years ago

@ugurdogrusoz I published a new release (0.4.4) that should fix the problem, the way you suggested.

ugurdogrusoz commented 6 years ago

@royludo Please contact me so we can talk about the status of the repos, etc. I have a feeling you're not getting our emails. Thanks.