search

rpetit3 / dragonflye

:dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads
GNU General Public License v3.0
117 stars 10 forks source link

how to check software in dragonflye? #32

Open xiekunwhy opened 6 months ago

xiekunwhy commented 6 months ago

Hi,

I don't know how dragonflye check software version. Dragonflye still using system bin path software after conda evn was activated. source /Bio/User/kxie/software/miniforge3/bin/activate dragonflye image

Why dragonflye don't use conda enviroment version? Some software in my system are very old. Like fastp, there are no --unpaired1 --unpaired2 options in early versions, so the pipeline stop with error like following: image

Best, Kun

rpetit3 commented 3 months ago

Hi @xiekunwhy

Sorry this is so late. I wonder if there is something in your PATH that is before the conda env.