In order to maintain proper VCF format the annotations should go into INFO fields
non synonymous vs synonymous SNPs,
reference and alternate represntations for codon and amino acids
locus tag for gene annotation
gi for gene annotation (seems redundant to locus tag)
gene name
gene description
comment (i.e. Negative strand: C -> T)
x-mer with SNP at the center
rpetit3
commented
10 years ago
In order to maintain proper VCF format the annotations should go into INFO fields
non synonymous vs synonymous SNPs, reference and alternate represntations for codon and amino acids locus tag for gene annotation gi for gene annotation (seems redundant to locus tag) gene name gene description comment (i.e. Negative strand: C -> T) x-mer with SNP at the center