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rpolicastro / tsrexplorer_old

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dinucleotide_frequencies #14

Closed zentnerlab closed 5 years ago

zentnerlab commented 5 years ago

where it at

rpolicastro commented 5 years ago

The function works for me. Can you reproduce it?

gzentner commented 5 years ago

This is what I'm seeing:

> frequencies <- dinucleotide_frequencies(exp, genome_assembly = assembly, threshold = 3)
Error in dinucleotide_frequencies(exp, genome_assembly = assembly, threshold = 3) : 
  could not find function "dinucleotide_frequencies"
> 
> p <- plot_dinucleotide_frequencies(frequencies, ncol = 3) +
+     ggplot2::theme(text = element_text(size = 6))
Error in eval(lhs, parent, parent) : object 'frequencies' not found
rpolicastro commented 5 years ago

I fixed an error in the plotting function. Check to see if this commit fixes your problem.

https://github.com/rpolicastro/tsrexplorer/commit/ff6ac04bcbd62b644233bbfba25883513258780d

rpolicastro commented 5 years ago

seems to have been fixed by updating conda