Closed FMKerckhof closed 5 years ago
Was ok on linux system with:
Session info -----------------------------------------------------------------------------------------
setting value
version R version 3.4.1 (2017-06-30)
system x86_64, linux-gnu
ui RStudio (1.0.153)
language en_US
collate en_US.UTF-8
tz Europe/Brussels
date 2017-09-06
Packages ---------------------------------------------------------------------------------------------
package * version date source
base * 3.4.1 2017-07-08 local
Biobase 2.36.2 2017-07-27 Bioconductor
BiocGenerics 0.22.0 2017-07-27 Bioconductor
bit 1.1-12 2014-04-09 CRAN (R 3.4.1)
boot 1.3-20 2017-07-30 CRAN (R 3.4.1)
changepoint 2.2.2 2016-10-04 cran (@2.2.2)
cluster 2.0.6 2017-03-16 CRAN (R 3.4.0)
codetools 0.2-15 2016-10-05 CRAN (R 3.3.1)
colorspace 1.3-2 2016-12-14 CRAN (R 3.4.1)
compiler 3.4.1 2017-07-08 local
corpcor 1.6.9 2017-04-01 cran (@1.6.9)
datasets * 3.4.1 2017-07-08 local
DEoptimR 1.0-8 2016-11-19 cran (@1.0-8)
devtools * 1.13.3 2017-08-02 CRAN (R 3.4.1)
digest 0.6.12 2017-01-27 CRAN (R 3.4.1)
evaluate 0.10.1 2017-06-24 CRAN (R 3.4.1)
flowAI * 1.4.4 2017-08-16 Bioconductor
flowClean * 1.14.0 2017-08-10 cran (@1.14.0)
flowCore * 1.42.2 2017-08-10 cran (@1.42.2)
flowFDA * 0.99 2017-08-10 Github (lievenclement/flowFDA@03aba88)
flowFP * 1.34.0 2017-08-10 cran (@1.34.0)
flowViz * 1.40.0 2017-08-10 cran (@1.40.0)
foreach * 1.4.3 2015-10-13 cran (@1.4.3)
ggplot2 * 2.2.1 2016-12-30 CRAN (R 3.4.1)
graph 1.54.0 2017-08-10 cran (@1.54.0)
graphics * 3.4.1 2017-07-08 local
grDevices * 3.4.1 2017-07-08 local
grid 3.4.1 2017-07-08 local
gtable 0.2.0 2016-02-26 CRAN (R 3.4.1)
hexbin 1.27.1 2016-12-05 cran (@1.27.1)
highr 0.6 2016-05-09 CRAN (R 3.4.1)
IDPmisc 1.1.17 2012-11-02 cran (@1.1.17)
iterators 1.0.8 2015-10-13 cran (@1.0.8)
KernSmooth 2.23-15 2015-06-29 CRAN (R 3.4.0)
knitr 1.16 2017-05-18 CRAN (R 3.4.1)
labeling 0.3 2014-08-23 CRAN (R 3.4.1)
lattice * 0.20-35 2017-03-25 CRAN (R 3.4.0)
latticeExtra 0.6-28 2016-02-09 cran (@0.6-28)
lazyeval 0.2.0 2016-06-12 CRAN (R 3.4.1)
magrittr 1.5 2014-11-22 CRAN (R 3.4.1)
markdown 0.8 2017-04-20 CRAN (R 3.4.1)
MASS * 7.3-47 2017-04-21 CRAN (R 3.4.0)
Matrix 1.2-11 2017-08-16 CRAN (R 3.4.1)
matrixStats 0.52.2 2017-04-14 cran (@0.52.2)
mclust * 5.3 2017-05-21 cran (@5.3)
memoise 1.1.0 2017-04-21 CRAN (R 3.4.1)
methods * 3.4.1 2017-07-08 local
mime 0.5 2016-07-07 CRAN (R 3.4.1)
multcomp * 1.4-6 2016-07-14 cran (@1.4-6)
munsell 0.4.3 2016-02-13 CRAN (R 3.4.1)
mvtnorm * 1.0-6 2017-03-02 cran (@1.0-6)
parallel 3.4.1 2017-07-08 local
pcaPP 1.9-72 2017-06-27 cran (@1.9-72)
Phenoflow * 1.1 2017-09-06 Github (rprops/Phenoflow_package@3a60891)
plyr 1.8.4 2016-06-08 CRAN (R 3.4.1)
RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.4.1)
Rcpp 0.12.12 2017-07-15 CRAN (R 3.4.1)
reshape2 1.4.2 2016-10-22 CRAN (R 3.4.1)
rlang 0.1.2 2017-08-09 CRAN (R 3.4.1)
robustbase 0.92-7 2016-12-09 cran (@0.92-7)
rrcov 1.4-3 2016-09-06 cran (@1.4-3)
sandwich 2.4-0 2017-07-26 cran (@2.4-0)
scales 0.5.0 2017-08-24 cran (@0.5.0)
sfsmisc 1.1-1 2017-06-08 cran (@1.1-1)
splines 3.4.1 2017-07-08 local
stats * 3.4.1 2017-07-08 local
stats4 3.4.1 2017-07-08 local
stringi 1.1.5 2017-04-07 CRAN (R 3.4.1)
stringr 1.2.0 2017-02-18 CRAN (R 3.4.1)
survival * 2.41-3 2017-04-04 CRAN (R 3.4.0)
TH.data * 1.0-8 2017-01-23 cran (@1.0-8)
tibble 1.3.4 2017-08-22 CRAN (R 3.4.1)
tools 3.4.1 2017-07-08 local
utils * 3.4.1 2017-07-08 local
withr 2.0.0 2017-07-28 CRAN (R 3.4.1)
zoo 1.8-0 2017-04-12 cran (@1.8-0)
Session info -------------------------------------------------------------------------------------------------------------
setting value
version R version 3.4.1 (2017-06-30)
system x86_64, linux-gnu
ui RStudio (1.0.153)
language (EN)
collate en_US.UTF-8
tz Europe/Brussels
date 2017-09-06
Packages -----------------------------------------------------------------------------------------------------------------
package * version date source
base * 3.4.1 2017-07-08 local
Biobase 2.36.2 2017-05-09 Bioconductor
BiocGenerics 0.22.0 2017-05-04 Bioconductor
bit 1.1-12 2014-04-09 CRAN (R 3.4.1)
boot 1.3-20 2017-07-30 CRAN (R 3.4.1)
changepoint 2.2.2 2016-10-04 CRAN (R 3.4.0)
cluster 2.0.6 2017-03-16 CRAN (R 3.4.0)
codetools 0.2-15 2016-10-05 CRAN (R 3.3.1)
colorspace 1.3-2 2016-12-14 CRAN (R 3.4.1)
compiler 3.4.1 2017-07-08 local
corpcor 1.6.9 2017-04-01 CRAN (R 3.4.1)
datasets * 3.4.1 2017-07-08 local
DEoptimR 1.0-8 2016-11-19 CRAN (R 3.4.1)
devtools * 1.13.3 2017-08-02 CRAN (R 3.4.1)
digest 0.6.12 2017-01-27 CRAN (R 3.4.1)
evaluate 0.10.1 2017-06-24 CRAN (R 3.4.0)
flowAI * 1.4.4 2017-08-15 Bioconductor
flowClean * 1.14.0 2017-06-20 cran (@1.14.0)
flowCore * 1.42.2 2017-07-08 Bioconductor
flowFDA * 0.99 2016-12-14 Github (lievenclement/flowFDA@03aba88)
flowFP * 1.34.0 2017-05-04 Bioconductor
flowViz * 1.40.0 2017-05-04 Bioconductor
foreach * 1.4.3 2015-10-13 CRAN (R 3.4.1)
ggplot2 * 2.2.1 2016-12-30 CRAN (R 3.3.2)
graph 1.54.0 2017-05-04 Bioconductor
graphics * 3.4.1 2017-07-08 local
grDevices * 3.4.1 2017-07-08 local
grid 3.4.1 2017-07-08 local
gtable 0.2.0 2016-02-26 CRAN (R 3.4.1)
hexbin 1.27.1 2016-12-05 CRAN (R 3.4.1)
highr 0.6 2016-05-09 CRAN (R 3.4.1)
IDPmisc 1.1.17 2012-11-02 CRAN (R 3.4.1)
iterators 1.0.8 2015-10-13 CRAN (R 3.4.1)
KernSmooth 2.23-15 2015-06-29 CRAN (R 3.4.0)
knitr 1.17 2017-08-10 CRAN (R 3.4.1)
labeling 0.3 2014-08-23 CRAN (R 3.4.1)
lattice * 0.20-35 2017-03-25 CRAN (R 3.3.3)
latticeExtra 0.6-28 2016-02-09 CRAN (R 3.4.1)
lazyeval 0.2.0 2016-06-12 CRAN (R 3.4.1)
magrittr 1.5 2014-11-22 CRAN (R 3.4.1)
markdown 0.8 2017-04-20 CRAN (R 3.4.0)
MASS * 7.3-47 2017-04-21 CRAN (R 3.4.0)
Matrix 1.2-11 2017-08-16 CRAN (R 3.4.1)
matrixStats 0.52.2 2017-04-14 CRAN (R 3.4.1)
mclust * 5.3 2017-05-21 CRAN (R 3.4.0)
memoise 1.1.0 2017-04-21 CRAN (R 3.4.0)
methods * 3.4.1 2017-07-08 local
mgcv 1.8-19 2017-08-29 CRAN (R 3.4.1)
mime 0.5 2016-07-07 CRAN (R 3.4.1)
multcomp * 1.4-6 2016-07-14 CRAN (R 3.3.1)
munsell 0.4.3 2016-02-13 CRAN (R 3.4.1)
mvtnorm * 1.0-6 2017-03-02 CRAN (R 3.4.1)
nlme 3.1-131 2017-02-06 CRAN (R 3.4.1)
parallel 3.4.1 2017-07-08 local
pcaPP 1.9-72 2017-06-27 CRAN (R 3.4.0)
permute 0.9-4 2016-09-09 CRAN (R 3.4.1)
Phenoflow * 1.1 2017-09-06 Github (rprops/Phenoflow_package@33c51fa)
plyr 1.8.4 2016-06-08 CRAN (R 3.4.1)
RColorBrewer 1.1-2 2014-12-07 CRAN (R 3.4.1)
Rcpp 0.12.12 2017-07-15 CRAN (R 3.4.1)
reshape2 1.4.2 2016-10-22 CRAN (R 3.3.2)
rlang 0.1.2 2017-08-09 CRAN (R 3.4.1)
robustbase 0.92-7 2016-12-09 CRAN (R 3.4.1)
rrcov 1.4-3 2016-09-06 CRAN (R 3.3.1)
sandwich 2.4-0 2017-07-26 CRAN (R 3.4.1)
scales 0.5.0 2017-08-24 CRAN (R 3.4.1)
sfsmisc 1.1-1 2017-06-08 CRAN (R 3.4.0)
splines 3.4.1 2017-07-08 local
stats * 3.4.1 2017-07-08 local
stats4 3.4.1 2017-07-08 local
stringi 1.1.5 2017-04-07 CRAN (R 3.4.1)
stringr 1.2.0 2017-02-18 CRAN (R 3.4.1)
survival * 2.41-3 2017-04-04 CRAN (R 3.4.1)
TH.data * 1.0-8 2017-01-23 CRAN (R 3.4.1)
tibble 1.3.4 2017-08-22 CRAN (R 3.4.1)
tools 3.4.1 2017-07-08 local
utils * 3.4.1 2017-07-08 local
vegan 2.4-4 2017-08-24 CRAN (R 3.4.1)
withr 2.0.0 2017-07-28 CRAN (R 3.4.1)
zoo 1.8-0 2017-04-12 CRAN (R 3.4.1)
Only difference: liblapack/libblas: Ubuntu where it doesn't work uses openblas
Matrix products: default BLAS: /usr/lib/openblas-base/libblas.so.3 LAPACK: /usr/lib/libopenblasp-r0.2.18.so
Where it does work regular blas (unoptimized)
Problem: different plots from div_rf()