Closed carolina671 closed 2 years ago
Hi @carolina671,
Stub should be a character vector of the patterns on which you want to pool.
For example:
flowdata1 <- FCS_pool(flowData, stub= c("Sample 1", "Sample 2", "Sample 3))
Should pool those samples. The space may be an issue, but can you quickly check if this works?
Thanks, I understand the FCS_POOL function now but it was not exactly was I was looking for as I wanted to merge all the flowframes. Please see below an example of what I wanted in case someone needs it, I found the solution in another site.
Hi, I wanted to ask about the functionality of FCS_pool as I am looking for a way to pool or concatenate specific frames of a flowSet object. I have replicates for a single sample and would like to combine the files by row (cells) as they have the same columns (channels). I tried FCS_pool function but i just end up with a flowframe with the same amount of replicates, is this what the function does? or am I using it wrong?
Also i tried to create a loop to produce multiple flowdata frames from the corresponding sample( > flowdata1= FCS_pool(flowData, stub= print(
sample 1
)), > flowdata2= FCS_pool(flowData, stub= print(sample 2
)).... and so on )but since the stub pattern is a character vector I have not figure out how to change the number of the i vector. Maybe any ideas on how to solve this issue?Thanks,