I am having installation issues. Please let me know. Below are errors and session_info.
install_github("CMET-UGent/Phenoflow_package")
Downloading GitHub repo CMET-UGent/Phenoflow_package@HEAD
Downloading GitHub repo FMKerckhof/flowFDA@HEAD
✔ checking for file ‘/private/var/folders/64/58fk04bx2335w895j8x608080000gn/T/RtmpvxRbct/remotes6637b127045/FMKerckhof-flowFDA-b6d8ec6/DESCRIPTION’ ...
─ preparing ‘flowFDA’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘flowFDA_0.99.tar.gz’
installing source package ‘flowFDA’ ...
using staged installation
R
inst
byte-compile and prepare package for lazy loading
Error in if (class(mclustProt[[i]]) == "try-error") { :
the condition has length > 1
Error: unable to load R code in package ‘flowFDA’
Execution halted
ERROR: lazy loading failed for package ‘flowFDA’
removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/flowFDA’
Downloading GitHub repo FMKerckhof/flowFDA@HEAD
Skipping flowFDA, it is already being installed
✔ checking for file ‘/private/var/folders/64/58fk04bx2335w895j8x608080000gn/T/RtmpvxRbct/remotes663b2c949e/CMET-UGent-Phenoflow_package-e8d096b/DESCRIPTION’ ...
─ preparing ‘Phenoflow’:
✔ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ building ‘Phenoflow_1.1.2.tar.gz’
ERROR: dependency ‘flowFDA’ is not available for package ‘Phenoflow’
removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Phenoflow’
Warning messages:
1: In i.p(...) :
installation of package ‘/var/folders/64/58fk04bx2335w895j8x608080000gn/T//RtmpvxRbct/file66377890122/flowFDA_0.99.tar.gz’ had non-zero exit status
2: In i.p(...) :
installation of package ‘/var/folders/64/58fk04bx2335w895j8x608080000gn/T//RtmpvxRbct/file6635b5001f0/Phenoflow_1.1.2.tar.gz’ had non-zero exit status
session_info()
─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.2.0 (2022-04-22)
os macOS Big Sur 11.5.2
system x86_64, darwin17.0
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/Indiana/Indianapolis
date 2022-06-02
rstudio 2022.02.2+485 Prairie Trillium (desktop)
pandoc NA
I am having installation issues. Please let me know. Below are errors and session_info.
ERROR: dependency ‘flowFDA’ is not available for package ‘Phenoflow’
─ Packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── package version date (UTC) lib source Biobase 2.56.0 2022-04-26 [1] Bioconductor BiocGenerics 0.42.0 2022-04-26 [1] Bioconductor BiocManager 1.30.18 2022-05-18 [1] CRAN (R 4.2.0) brio 1.1.3 2021-11-30 [1] CRAN (R 4.2.0) cachem 1.0.6 2021-08-19 [1] CRAN (R 4.2.0) callr 3.7.0 2021-04-20 [1] CRAN (R 4.2.0) cli 3.3.0 2022-04-25 [1] CRAN (R 4.2.0) codetools 0.2-18 2020-11-04 [1] CRAN (R 4.2.0) crayon 1.5.1 2022-03-26 [1] CRAN (R 4.2.0) curl 4.3.2 2021-06-23 [1] CRAN (R 4.2.0) cytolib 2.8.0 2022-04-26 [1] Bioconductor desc 1.4.1 2022-03-06 [1] CRAN (R 4.2.0) devtools 2.4.3 2021-11-30 [1] CRAN (R 4.2.0) ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.2.0) fastmap 1.1.0 2021-01-25 [1] CRAN (R 4.2.0) flowCore 2.8.0 2022-04-26 [1] Bioconductor flowFDAExampleData 0.99 2022-06-01 [1] Github (lievenclement/flowFDAExampleData@e187edf) flowFP 1.54.0 2022-04-26 [1] Bioconductor flowViz 1.60.0 2022-04-26 [1] Bioconductor fs 1.5.2 2021-12-08 [1] CRAN (R 4.2.0) glue 1.6.2 2022-02-24 [1] CRAN (R 4.2.0) hexbin 1.28.2 2021-01-08 [1] CRAN (R 4.2.0) IDPmisc 1.1.20 2020-01-21 [1] CRAN (R 4.2.0) jpeg 0.1-9 2021-07-24 [1] CRAN (R 4.2.0) KernSmooth 2.23-20 2021-05-03 [1] CRAN (R 4.2.0) lattice 0.20-45 2021-09-22 [1] CRAN (R 4.2.0) latticeExtra 0.6-29 2019-12-19 [1] CRAN (R 4.2.0) lifecycle 1.0.1 2021-09-24 [1] CRAN (R 4.2.0) magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0) MASS 7.3-57 2022-04-22 [1] CRAN (R 4.2.0) Matrix 1.4-1 2022-03-23 [1] CRAN (R 4.2.0) matrixStats 0.62.0 2022-04-19 [1] CRAN (R 4.2.0) mclust 5.4.10 2022-05-20 [1] CRAN (R 4.2.0) memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0) multcomp 1.4-19 2022-04-26 [1] CRAN (R 4.2.0) mvtnorm 1.1-3 2021-10-08 [1] CRAN (R 4.2.0) pkgbuild 1.3.1 2021-12-20 [1] CRAN (R 4.2.0) pkgload 1.2.4 2021-11-30 [1] CRAN (R 4.2.0) png 0.1-7 2013-12-03 [1] CRAN (R 4.2.0) prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.2.0) processx 3.5.3 2022-03-25 [1] CRAN (R 4.2.0) ps 1.7.0 2022-04-23 [1] CRAN (R 4.2.0) purrr 0.3.4 2020-04-17 [1] CRAN (R 4.2.0) R6 2.5.1 2021-08-19 [1] CRAN (R 4.2.0) RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.2.0) Rcpp 1.0.8.3 2022-03-17 [1] CRAN (R 4.2.0) RcppParallel 5.1.5 2022-01-05 [1] CRAN (R 4.2.0) remotes 2.4.2 2021-11-30 [1] CRAN (R 4.2.0) rlang 1.0.2 2022-03-04 [1] CRAN (R 4.2.0) rprojroot 2.0.3 2022-04-02 [1] CRAN (R 4.2.0) RProtoBufLib 2.8.0 2022-04-26 [1] Bioconductor rstudioapi 0.13 2020-11-12 [1] CRAN (R 4.2.0) S4Vectors 0.34.0 2022-04-26 [1] Bioconductor sandwich 3.0-1 2021-05-18 [1] CRAN (R 4.2.0) sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0) survival 3.3-1 2022-03-03 [1] CRAN (R 4.2.0) testthat 3.1.4 2022-04-26 [1] CRAN (R 4.2.0) TH.data 1.1-1 2022-04-26 [1] CRAN (R 4.2.0) usethis * 2.1.6 2022-05-25 [1] CRAN (R 4.2.0) withr 2.5.0 2022-03-03 [1] CRAN (R 4.2.0) zoo 1.8-10 2022-04-15 [1] CRAN (R 4.2.0)
[1] /Library/Frameworks/R.framework/Versions/4.2/Resources/library
Sincerely, Rabindra