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rqtl
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qtl2
QTL analysis software for high-dimensional data and complex cross designs
https://kbroman.org/qtl2
GNU General Public License v3.0
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Extreme values from scan1coef
#235
kieranatkins
closed
3 months ago
2
use multiple cores in scan1_pg.R routine scan1_pg_clean
#234
byandell
closed
3 months ago
1
New version on CRAN: 0.36
#233
kbroman
closed
4 months ago
0
SDP panel not working in plot_snpinfo() plots?
#232
kbroman
closed
6 months ago
1
Fix compiler warning on CRAN
#231
kbroman
closed
10 months ago
0
Compiler warning on CRAN
#230
kbroman
closed
10 months ago
0
Implement find_dup_markers(), port of qtl::findDupMarkers()
#229
kbroman
closed
11 months ago
0
possible bug in chisq_colpairs()
#228
kbroman
closed
11 months ago
0
remove intcovar mention in scan1blup help
#227
kbroman
closed
11 months ago
0
Genotype format conversion for multiparental MAGIC populations 123
#226
jamonterotena
closed
11 months ago
1
Implement findDupMarkers()
#225
kbroman
closed
11 months ago
0
Effects of using pmap instead of gmap
#224
micwij
closed
1 year ago
3
qtl2::read_csv() masks readr::read_csv()
#223
micwij
closed
1 year ago
2
Link to function man pages
#222
kbroman
closed
1 year ago
1
Add explanation of weights in est_herit
#221
gtsambos
closed
1 year ago
3
calc_het() assumes 2-char genotypes
#220
kbroman
closed
1 year ago
0
scan1snps(): subset genoprobs and map to same positions
#219
kbroman
closed
6 months ago
0
Check for missing values in map in scan1snps()
#218
kbroman
closed
6 months ago
0
changes for CRAN ver 0.32
#217
kbroman
closed
1 year ago
0
plot_genes() allow strand to be numeric +/- 1rather than just char +/-
#216
kbroman
closed
1 year ago
0
plot_snpasso() needs snp name to be "snp_id"
#215
kbroman
closed
1 year ago
2
Give warning if sex isn't provided but is needed
#214
kbroman
closed
1 year ago
0
yaml and genotype file format
#213
yifangt
closed
1 year ago
1
Corrections for DOF1/HSF1 data
#212
kbroman
closed
1 year ago
1
Give warning if cross contains unneeded founder_geno
#211
kbroman
closed
1 year ago
0
Seems like predict_snpgeno don't work for DOF1 data
#210
kbroman
closed
2 years ago
2
Odd warning in read_cross2
#209
kbroman
closed
1 year ago
0
Can I generate a genetic map with R/qtl2?
#208
Jiseon623
closed
2 years ago
2
Add warning to scan2snps if SDP missing
#207
kbroman
closed
1 year ago
0
Can I use already existed probability data into qtl2
#206
BoraKim2018
closed
2 years ago
1
convert vcf file of an haploid to run r/qtl or r/qtl2
#205
jeancarlier34
closed
2 years ago
1
qtl2 crashing R sessions via Rcpp
#204
rkmeade
closed
2 years ago
1
Disregard
#203
SmithLabDuke
closed
2 years ago
0
Add tutorial about switching to GRCm39
#202
kbroman
closed
1 year ago
1
test of arrange_genes has messed up text
#201
kbroman
closed
2 years ago
0
Create 4-way cross type
#200
kbroman
opened
3 years ago
0
In User Guide, show effect plot at QTL
#199
kbroman
opened
3 years ago
0
Add sdp_panel arg to plot_snpasso() to show panel SNP SDPs
#198
kbroman
closed
3 years ago
0
A whole bunch of changes, including revised CC colors
#197
kbroman
closed
3 years ago
0
step() returning NaN for "genail8"
#196
kbroman
closed
3 years ago
2
Bug in scan1snps() if snpinfo is incomplete
#195
kbroman
closed
3 years ago
1
problem with calc_genoprob if no genetic map
#194
kbroman
closed
3 years ago
0
SE of estimated heritability
#193
kbroman
opened
3 years ago
1
zip_datafiles() not working on windows
#192
kbroman
opened
3 years ago
1
Create replace_ids.matrix() for replacing IDs in a matrix
#191
kbroman
closed
3 years ago
0
Have calc_het() give an error if input are allele dosages
#190
kbroman
closed
3 years ago
0
ind_ids() for genoprobs object
#189
kbroman
closed
3 years ago
1
Several small changes
#188
kbroman
closed
3 years ago
0
Fix Issue #146 so predict_snpgeno() works with RIL
#187
kbroman
closed
3 years ago
0
Fix a bunch of small problems
#186
kbroman
closed
3 years ago
0
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