Added function scan1perm() for performing permutation test with single-QTL scan. Like scan1(), but with additional arguments and returning only genome-wide maximum LOD scores. The output is given class "scan1perm".
Added rbind.scan1perm and cbind.scan1perm for combining multiple scan1perm objects.
Added summary.scan1perm for summarizing permutation results, to obtain estimated significance thresholds.
Need to be careful about memory usage, particularly with high-dimensional genotypes using multiple cores.
Added function
scan1perm()for performing permutation test with single-QTL scan. Likescan1(), but with additional arguments and returning only genome-wide maximum LOD scores. The output is given class"scan1perm".Added
rbind.scan1permandcbind.scan1permfor combining multiplescan1permobjects.Added
summary.scan1permfor summarizing permutation results, to obtain estimated significance thresholds.Need to be careful about memory usage, particularly with high-dimensional genotypes using multiple cores.