Implemented model=binary (for phenotypes with values 0/1) in scan1, scan1coef, scan1perm, and fit1, including the possibility of using weights.
This is not yet available with a kinship correction, which looks to be quite hard. I'm thinking I'll try CERAMIC (Zhong, Jiang, and McPeek 2016, doi:10.1371/journal.pgen.1006329)
Added a bit of discussion of this in the User Guide.
Implemented
model=binary(for phenotypes with values0/1) inscan1,scan1coef,scan1perm, andfit1, including the possibility of using weights.This is not yet available with a kinship correction, which looks to be quite hard. I'm thinking I'll try CERAMIC (Zhong, Jiang, and McPeek 2016, doi:10.1371/journal.pgen.1006329)
Added a bit of discussion of this in the User Guide.