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rr1859 / R.4Cker

MIT License
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error messages in reduced_genome.sh #17

Open lwtan90 opened 7 years ago

lwtan90 commented 7 years ago

Hi,

I am wondering if these error messages are normal. `Lmod has detected the following error: The following module(s) are unknown: "bedtools"

Please check the spelling or version number. Also try "module spider ..."

Lmod has detected the following error: The following module(s) are unknown: "kent"

Please check the spelling or version number. Also try "module spider ..."

reduced_genome.sh: line 11: cd: folder_for_analysis: No such file or directory `

The reason for this question is because in the directory, I am still seeing the oligomatch.bed,up.txt,down.txt, etc despite the error messages.

Wilson

rr1859 commented 7 years ago

Hi, the reduced_genome.sh requires bedtools, kent so make sure you have those downloaded. Also in line 11 of the script please change the name of the folder.

trotos commented 7 years ago

hallo, I read in the .sh script that you state the "load module" function. those are for a "cluster/server", right? I just skipping those lines and run the commands as if locally.