Open DimitrisZisis opened 6 years ago
I am getting this error, as well, but for me changing the value of k didn't fix it. Oddly, I have run the same files previously without getting the error, so I have no idea what's causing it. Can anyone tell me what this error means, and how to fix it? Thanks, Erin Brettmann
Hi,
Sorry for the late reply. I think the issue is to do with merging the windows of the final output. I have modified the merge_windows.R file. Please try now and let me know if the problem is still there.
Thank you, that appears to have fixed it!
Dear Ramya,
I am producing bedgraph files from bam by using your script ( i modified the chr and i add it at the end cause my mapping files had only 1,2 etc instead of chr1, chr2 ) . When i am trying to run 4Cker for mouse data i have an error sometimes . this is the R input I used and error message :
As because i have a 6bp cutter i use for nearbait k=10 and i have the error. If i change the k=5 it works . I have seen that this happened again but i dont get what is the solution . Could you please help me with that ?
Best
Dimitris Zisis