I am working with PacBio hifi reads that contain the MM and ML tags, after aligning this bam file to the reference assembly, I sorted the file and tried indexing the file. Unfortunately, I received an error like Chromosome blocks are not continuous, hence I could not use the modbamtools for plotting. So if anyone can assist with this I will be glad. Thanks.
I am working with PacBio hifi reads that contain the MM and ML tags, after aligning this bam file to the reference assembly, I sorted the file and tried indexing the file. Unfortunately, I received an error like Chromosome blocks are not continuous, hence I could not use the modbamtools for plotting. So if anyone can assist with this I will be glad. Thanks.