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rrnewton / PhyBin

Binning (Newick) Phylogenetic Trees by Topology
http://people.csail.mit.edu/newton/phybin
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Hierarchical clustering can sometimes produce cyclic Dendrograms #9

Closed rrnewton closed 11 years ago

rrnewton commented 11 years ago

This is especially terrible because it throws the rest of the program into an infinite loop.

I'm not yet sure whether this happens for any valid inputs, or only invalid ones. But in a any case it appears to be a bug in the underlying hierarchical-clustering package.

rrnewton commented 11 years ago

This was due to a failure to rename trees in the same file with unique names. Fixed now.